Hi Dana, Thanks for your response.
I've tried with your method to patch and compile hdf5-1.10.0-patch1 source code. Patch and compile have no error. Unfortunately when run my code the error still exist. And error information is the same as before. What should I do? Please help me. Thank you again for your effort! Haijun Yu At 2016-07-26 13:47:39, "Dana Robinson" <[email protected]> wrote: Hi, It looks like flock() is not implemented on your filesystem, which is causing the create call to fail. flock() file locking is used by the HDF5 1.10.0 to help enforce single-writer/multiple-readers (SWMR) semantics, but is not necessary for correct operation of the library. A fix for this problem should be available in HDF5 1.10.1, but in the meantime you can apply a source patch found here: https://www.hdfgroup.org/HDF5/release/obtainsrc5110.html#conf under "Patch to Disable File Locking" at the bottom of the page. Cheers, Dana Robinson Software Engineer The HDF Group From: Hdf-forum [mailto:[email protected]] On Behalf Of ??? Sent: Tuesday, July 26, 2016 1:35 AM To:[email protected] Subject: [Hdf-forum] Error detected in HDF5 (1.10.0) thread 0: /home/hdftest/snapshots-hdf5_1_10_alpha/current/src Hi, I have met an obscure failure, and not find a good solution for two days. Could you help me? Thanks! (Using: hdf5-1.10.0-patch1-linux-centos6-x86_64-gcc447-shared.tar.gz) (Environment: redhat6.4-Intel-X64-g++4.4.7) The error information: HDF5-DIAG: Error detected in HDF5 (1.10.0) thread 0: #000: /home/hdftest/snapshots-hdf5_1_10_alpha/current/src/H5F.c line 491 in H5Fcreate(): unable to create file major: File accessibilty minor: Unable to open file #001: /home/hdftest/snapshots-hdf5_1_10_alpha/current/src/H5Fint.c line 1168 in H5F_open(): unable to lock the file or initialize file structure major: File accessibilty minor: Unable to open file #002: /home/hdftest/snapshots-hdf5_1_10_alpha/current/src/H5FD.c line 1821 in H5FD_lock(): driver lock request failed major: Virtual File Layer minor: Can't update object #003: /home/hdftest/snapshots-hdf5_1_10_alpha/current/src/H5FDsec2.c line 939 in H5FD_sec2_lock(): unable to flock file, errno = 38, error message = 'Function not implemented' major: File accessibilty minor: Bad file ID accessed HDF5-DIAG: Error detected in HDF5 (1.10.0) thread 0: #000: /home/hdftest/snapshots-hdf5_1_10_alpha/current/src/H5F.c line 749 in H5Fclose(): not a file ID major: Invalid arguments to routine minor: Inappropriate type compile no error: g++ -c packageHdf5.cpp -I ../latest/include -L ../latest/lib -lhdf5 -lhdf5_cpp link no error: g++ -o packageHdf5Run packageHdf5.o -I ../latest/include -L ../latest/lib -lhdf5 -lhdf5_cpp run error: ./packageHdf5Run (error information as above) My code: #include <stdio.h> #include <iostream> #include <string> #include "H5Cpp.h" #include <H5File.h> #include "hdf5.h" #ifndef H5_NO_NAMESPACE using namespace H5; #endif using namespace std; int main(int argc, char* argv[]) { hid_t file_id = H5Fcreate("/home/tg2hpps/tg2hpps_main/src/packageHdf5/dsetddd.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); H5Fclose(file_id); } Thanks!
_______________________________________________ Hdf-forum is for HDF software users discussion. [email protected] http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org Twitter: https://twitter.com/hdf5
