On 01/08/2017 17:02, kostas syranidis wrote:
Dear all,
I hope I am referring to the correct hdf community.
I recently attempted to install parallel hdf5-1.10.1 from source in
cygwin and stumbled into a SIG_SETMASK undeclared error during make.
In general I tried to follow the instructions from
https://support.hdfgroup.org/ftp/HDF5/current/src/unpacked/release_docs/INSTALL_parallel
<https://support.hdfgroup.org/ftp/HDF5/current/src/unpacked/release_docs/INSTALL_parallel>
First I run the c version of the Sample_mpio.c and I suppose it worked:
Proc 2: all tests passed
Proc 3: all tests passed
Proc 1: all tests passed
Proc 0: all tests passed
Then I tried:
CC=mpicc ./configure --enable-parallel --enable-shared
and then make
but at some point it exited with this
"SIG_SETMASK undeclared ... #define HDsigsetjmp(J,N) sigsetjmp(J,N) ... in
expansion of macro ..."
error.
the problem is not due to the --enable-parallel
Trying to rebuild the serial 1.8.18 I see the same issue,
so it is likely a consequence of changes in the cygwing headers.
Since there are no separate instructions for cygwin, like for the serial case,
I thought it might be an issue of cygwin. Does anyone know how to fix this?
I will look on that, but it could be in September
One last question about the installation is szip. I built from source into the
home folder but I have not changed any path variables. Will hdf be able to find
it or is it not important?
I use Windows 7 and cygwin 2.8.2.
Any help would be appreciated.
With kind regards,
Konstantinos Syranidis
Regards
Marco
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