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https://issues.apache.org/jira/browse/HDFS-14476?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16901462#comment-16901462
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Wei-Chiu Chuang commented on HDFS-14476:
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Sean, please offer patch for trunk branch. If the patch applies I can get them
into lower branches (3.2, 3.1.,...)
> lock too long when fix inconsistent blocks between disk and in-memory
> ---------------------------------------------------------------------
>
> Key: HDFS-14476
> URL: https://issues.apache.org/jira/browse/HDFS-14476
> Project: Hadoop HDFS
> Issue Type: Improvement
> Components: datanode
> Affects Versions: 2.6.0, 2.7.0
> Reporter: Sean Chow
> Assignee: Sean Chow
> Priority: Major
> Attachments: HDFS-14476.00.patch, datanode-with-patch-14476.png
>
>
> When directoryScanner have the results of differences between disk and
> in-memory blocks. it will try to run {{checkAndUpdate}} to fix it. However
> {{FsDatasetImpl.checkAndUpdate}} is a synchronized call
> As I have about 6millions blocks for every datanodes and every 6hours' scan
> will have about 25000 abnormal blocks to fix. That leads to a long lock
> holding FsDatasetImpl object.
> let's assume every block need 10ms to fix(because of latency of SAS disk),
> that will cost 250 seconds to finish. That means all reads and writes will be
> blocked for 3mins for that datanode.
>
> {code:java}
> 2019-05-06 08:06:51,704 INFO
> org.apache.hadoop.hdfs.server.datanode.DirectoryScanner: BlockPool
> BP-1644920766-10.223.143.220-1450099987967 Total blocks: 6850197, missing
> metadata files:23574, missing block files:23574, missing blocks in
> memory:47625, mismatched blocks:0
> ...
> 2019-05-06 08:16:41,625 INFO org.apache.hadoop.hdfs.server.datanode.DataNode:
> Took 588402ms to process 1 commands from NN
> {code}
> Take long time to process command from nn because threads are blocked. And
> namenode will see long lastContact time for this datanode.
> Maybe this affect all hdfs versions.
> *how to fix:*
> just like process invalidate command from namenode with 1000 batch size, fix
> these abnormal block should be handled with batch too and sleep 2 seconds
> between the batch to allow normal reading/writing blocks.
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