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https://issues.apache.org/jira/browse/HDFS-15240?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17240038#comment-17240038
]
Hadoop QA commented on HDFS-15240:
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|| Vote || Subsystem || Runtime || Logfile || Comment ||
| {color:blue}0{color} | {color:blue} reexec {color} | {color:blue} 1m
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|| || || || {color:brown} Prechecks {color} || ||
| {color:green}+1{color} | {color:green} dupname {color} | {color:green} 0m
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| {color:green}+1{color} | {color:green} @author {color} | {color:green} 0m
0s{color} | {color:green}{color} | {color:green} The patch does not contain any
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| {color:green}+1{color} | {color:green} {color} | {color:green} 0m 0s{color}
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|| || || || {color:brown} trunk Compile Tests {color} || ||
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{color:red}https://ci-hadoop.apache.org/job/PreCommit-HDFS-Build/320/artifact/out/patch-unit-hadoop-hdfs-project_hadoop-hdfs.txt{color}
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| {color:black}{color} | {color:black} {color} | {color:black}311m 7s{color} |
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|| Reason || Tests ||
| Failed junit tests | hadoop.hdfs.TestReadStripedFileWithDecodingDeletedData |
| | hadoop.hdfs.TestEncryptionZonesWithKMS |
| | hadoop.hdfs.TestDecommissionWithStriped |
| | hadoop.hdfs.TestFileChecksumCompositeCrc |
| | hadoop.hdfs.TestRollingUpgrade |
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|| Subsystem || Report/Notes ||
| Docker | ClientAPI=1.40 ServerAPI=1.40 base:
https://ci-hadoop.apache.org/job/PreCommit-HDFS-Build/320/artifact/out/Dockerfile
|
| JIRA Issue | HDFS-15240 |
| JIRA Patch URL |
https://issues.apache.org/jira/secure/attachment/13016148/HDFS-15240.011.patch |
| Optional Tests | dupname asflicense compile javac javadoc mvninstall mvnsite
unit shadedclient findbugs checkstyle |
| uname | Linux 11b09427c0f1 4.15.0-112-generic #113-Ubuntu SMP Thu Jul 9
23:41:39 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux |
| Build tool | maven |
| Personality | personality/hadoop.sh |
| git revision | trunk / 68442b48c8a |
| Default Java | Private Build-1.8.0_275-8u275-b01-0ubuntu1~18.04-b01 |
| Multi-JDK versions |
/usr/lib/jvm/java-11-openjdk-amd64:Ubuntu-11.0.9.1+1-Ubuntu-0ubuntu1.18.04
/usr/lib/jvm/java-8-openjdk-amd64:Private
Build-1.8.0_275-8u275-b01-0ubuntu1~18.04-b01 |
| Test Results |
https://ci-hadoop.apache.org/job/PreCommit-HDFS-Build/320/testReport/ |
| Max. process+thread count | 2844 (vs. ulimit of 5500) |
| modules | C: hadoop-common-project/hadoop-common
hadoop-hdfs-project/hadoop-hdfs U: . |
| Console output |
https://ci-hadoop.apache.org/job/PreCommit-HDFS-Build/320/console |
| versions | git=2.17.1 maven=3.6.0 findbugs=4.0.6 |
| Powered by | Apache Yetus 0.13.0-SNAPSHOT https://yetus.apache.org |
This message was automatically generated.
> Erasure Coding: dirty buffer causes reconstruction block error
> --------------------------------------------------------------
>
> Key: HDFS-15240
> URL: https://issues.apache.org/jira/browse/HDFS-15240
> Project: Hadoop HDFS
> Issue Type: Bug
> Components: datanode, erasure-coding
> Reporter: HuangTao
> Assignee: HuangTao
> Priority: Major
> Attachments: HDFS-15240.001.patch, HDFS-15240.002.patch,
> HDFS-15240.003.patch, HDFS-15240.004.patch, HDFS-15240.005.patch,
> HDFS-15240.006.patch, HDFS-15240.007.patch, HDFS-15240.008.patch,
> HDFS-15240.009.patch, HDFS-15240.010.patch, HDFS-15240.011.patch,
> image-2020-07-16-15-56-38-608.png,
> org.apache.hadoop.hdfs.TestReconstructStripedFile-output.txt,
> org.apache.hadoop.hdfs.TestReconstructStripedFile.txt,
> test-HDFS-15240.006.patch
>
>
> When read some lzo files we found some blocks were broken.
> I read back all internal blocks(b0-b8) of the block group(RS-6-3-1024k) from
> DN directly, and choose 6(b0-b5) blocks to decode other 3(b6', b7', b8')
> blocks. And find the longest common sequenece(LCS) between b6'(decoded) and
> b6(read from DN)(b7'/b7 and b8'/b8).
> After selecting 6 blocks of the block group in combinations one time and
> iterating through all cases, I find one case that the length of LCS is the
> block length - 64KB, 64KB is just the length of ByteBuffer used by
> StripedBlockReader. So the corrupt reconstruction block is made by a dirty
> buffer.
> The following log snippet(only show 2 of 28 cases) is my check program
> output. In my case, I known the 3th block is corrupt, so need other 5 blocks
> to decode another 3 blocks, then find the 1th block's LCS substring is block
> length - 64kb.
> It means (0,1,2,4,5,6)th blocks were used to reconstruct 3th block, and the
> dirty buffer was used before read the 1th block.
> Must be noted that StripedBlockReader read from the offset 0 of the 1th block
> after used the dirty buffer.
> EDITED for readability.
> {code:java}
> decode from block[0, 2, 3, 4, 5, 7] to generate block[1', 6', 8']
> Check the first 131072 bytes between block[1] and block[1'], the longest
> common substring length is 4
> Check the first 131072 bytes between block[6] and block[6'], the longest
> common substring length is 4
> Check the first 131072 bytes between block[8] and block[8'], the longest
> common substring length is 4
> decode from block[0, 2, 3, 4, 5, 6] to generate block[1', 7', 8']
> Check the first 131072 bytes between block[1] and block[1'], the longest
> common substring length is 65536
> CHECK AGAIN: all 27262976 bytes between block[1] and block[1'], the longest
> common substring length is 27197440 # this one
> Check the first 131072 bytes between block[7] and block[7'], the longest
> common substring length is 4
> Check the first 131072 bytes between block[8] and block[8'], the longest
> common substring length is 4{code}
> Now I know the dirty buffer causes reconstruction block error, but how does
> the dirty buffer come about?
> After digging into the code and DN log, I found this following DN log is the
> root reason.
> {code:java}
> [INFO] [stripedRead-1017] : Interrupted while waiting for IO on channel
> java.nio.channels.SocketChannel[connected local=/xxxxxxxx:52586
> remote=/xxxxxxxx:50010]. 180000 millis timeout left.
> [WARN] [StripedBlockReconstruction-199] : Failed to reconstruct striped
> block: BP-714356632-xxxxxxxx-1519726836856:blk_-YYYYYYYYYYYYYY_3472979393
> java.lang.NullPointerException
> at
> org.apache.hadoop.hdfs.util.StripedBlockUtil.getNextCompletedStripedRead(StripedBlockUtil.java:314)
> at
> org.apache.hadoop.hdfs.server.datanode.erasurecode.StripedReader.doReadMinimumSources(StripedReader.java:308)
> at
> org.apache.hadoop.hdfs.server.datanode.erasurecode.StripedReader.readMinimumSources(StripedReader.java:269)
> at
> org.apache.hadoop.hdfs.server.datanode.erasurecode.StripedBlockReconstructor.reconstruct(StripedBlockReconstructor.java:94)
> at
> org.apache.hadoop.hdfs.server.datanode.erasurecode.StripedBlockReconstructor.run(StripedBlockReconstructor.java:60)
> at
> java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
> at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
> at
> java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
> at
> java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
> at java.base/java.lang.Thread.run(Thread.java:834) {code}
> Reading from DN may timeout(hold by a future(F)) and output the INFO log, but
> the futures that contains the future(F) is cleared,
> {code:java}
> return new StripingChunkReadResult(futures.remove(future),
> StripingChunkReadResult.CANCELLED); {code}
> futures.remove(future) cause NPE. So the EC reconstruction is failed. In the
> finally phase, the code snippet in *getStripedReader().close()*
> {code:java}
> reconstructor.freeBuffer(reader.getReadBuffer());
> reader.freeReadBuffer();
> reader.closeBlockReader(); {code}
> free buffer firstly, but the StripedBlockReader still holds the buffer and
> write it, that pollute the buffer of BufferPool.
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