Sorry, I suppose I didn't explain all the steps.

Ultimately, I booted into konppix (32bit) and changed the automatic entry in 
cypttab and fstab to noauto ( this normally asks for a password at startup so 
encrypted disks can be mounted ).  That allowed the boot process to continue 
automatically. After crossing everything and waiting for all the fscks to 
finish I got a login screen.

Then I installed refind ( a EFI bootloader alternative to Grub2) which doesn't 
cause the boot process to be hidden.

The original problem I was trying to fix still isn't fixed - refind doesn't 
remove the warning I get in the log, but it's not the reason I posted.

On Sunday 06 Jan 2013 12:51:42 Andrey Borzenkov wrote:
> В Sat, 05 Jan 2013 20:54:06 +0000
> 
> Richard Collins <[email protected]> пишет:
> > Thanks Tom but the problem wasn't the discs, I've had some success.  It's
> > a
> > case of multi problems, I think my PC has a grudge.
> 
> You say "SOLVED" but do not explain how. It would be helpful for others
> if you explained how you solved it.
> 
> > Problem #1: no keyboard/mouse with 64 bit distros
> > Reason: IOMMU support was enabled in the BIOS, this was enabled to try and
> > fix #2
> > 
> > Problem #2: NVidia driver is unstable on a Grub2+EFI+64bit system
> > The fix was supposed to be disable the graphics that grub uses.  This
> > causes #3
> > 
> > Problem 3#: Changing the grub settings I discribed means that you can't
> > see
> > the boot screen - not a feature I'm comfortable with and stops booting if
> > the boot process needs user input.
> > Solution: ?
> 
> So that I understand what happens
> 
> - you get GRUB2 screen. You see output and can use keyboard to navigate
>   it. Right?

Yes - the keyboard, mouse, network (and probably others) stopped working when 
a 64bit kernel is running.

> - GRUB2 screen itself is in text mode or in graphic mode?

It's always been in text mode as far as I can remember

> - when you select GRUB2 menu entry to launch Linux you get messages
>   about wrong mode and "booting blind". No output from Linux kernel
>   after that. Correct?

Yes - some HDD light flashing but as it's on a SSD it never flashes for very 
long anyway. After disabling the automatic crypt disk mounting it started 
performing checks on the harddrives and eventually started X

> 
> > On Saturday 05 Jan 2013 14:16:13 you wrote:
> > 
> > Hello all, I need some help. My system has become unbootable.
> > 
> > It was working fine with EFI booting until I set the following in
> > /etc/default/grub.conf
> > GRUB_GFXPAYLOAD_LINUX=text
> > GRUB_GFXMODE=auto
> > 
> > I then ran update-grub2
> > 
> > When I reboot grub says:
> > "error: invalid video mode specification 'text'
> > "booting in blind mode"
> > 
> > the system then hangs indefinatly after a brief flash from the harddrive. 
> > It may be waiting for a password for an encrypted volume I have but i
> > wont repond to "S" or "Esc" keypresses
> > 
> > I've tried adding set gfxpayload=true|keep|false - none of which work
> > Ive tried adding set gfxmode=640x480
> > 
> > The kubuntu boot cd wont load properly and 12.04 has broken keyboard /
> > mouse support. this is driving me mad!
> > 
> > How can I undo the changes I made at the commandline?
> > Does anyone know a good efi rescue system?
> > 
> > I have a MSI 990FXA-GD65 (version E7640AMS V19.9)
> > The system only has Kubuntu 12.10 installed on ssd with gpt
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