On 31 Oct 2012 05:25, "FARKAS, Illes" <[email protected]> wrote: > Thanks! How about multiple solutions? Biochemical systems often have more > than one stable solution.
Monte-carlo algorithms tend to be good for this sort of thing. You can get quite a good idea of the energy landscape this way, although presenting more than two gets awkward quickly... > What tools would you or other readers of this list recommend? Python, R, Matlab/Octave and finally C for performance tends to be my personal tools of choice here. I tend to use most of them most weeks. Scala could be a fun one to look at though: http://darrenjw.wordpress.com/2011/07/16/gibbs-sampler-in-various-languages-revisited/ Sam
