Dear Simon,
Now the error is coming from python-scikit-learn-0.20.4. Please find my answers and comments inline. best regards, Hong ________________________________ From: zimoun <[email protected]> Sent: 30 September 2020 14:11 To: Li, Hong Cc: Ludovic Courtès; [email protected] Subject: Re: [ext] Re: failed to install the python-umap-learn package On Wed, 30 Sep 2020 at 13:41, [email protected] <[email protected]> wrote: > $ guix time-machine --commit=cd5406effa34fa5cfda7eb7bbd2ccaf5201cf523 -- > package -p guix/new/.guix-profile -i python3 python-umap-learn > Updating channel 'guix' from Git repository at > 'https://git.savannah.gnu.org/git/guix.git'... > Updating channel 'guix-bimsb' from Git repository at > 'https://github.com/BIMSBbioinfo/guix-bimsb.git'... > Updating channel 'guix-past' from Git repository at > 'https://gitlab.inria.fr/guix-hpc/guix-past'... > Updating channel 'guix-bimsb-nonfree' from Git repository at > 'https://github.com/BIMSBbioinfo/guix-bimsb-nonfree.git'... [...] > |builder for `/gnu/store/jvffmvaz1rm0q11c57wmsp08h0slj9ym-guix-past.drv' > failed to produce output path > `/gnu/store/gg8fs00h7vqx29icijxpd7w99z1p8lmf-guix-past' > build of /gnu/store/jvffmvaz1rm0q11c57wmsp08h0slj9ym-guix-past.drv failed The error comes from the channel 'guix-past'. Well, I will investigate later... Therefore, you have to turn off this channel. The simplest is to run: echo "%default-channels" > /tmp/chan.scm guix time-machine --commit=cd5406effa34fa5cfda7eb7bbd2ccaf5201cf523 \ -C /tmp/chan.scm \ -- package -p guix/new/.guix-profile -i python3 python-umap-learn Hope that helps. [[email protected]:~] $ guix time-machine --commit=cd5406effa34fa5cfda7eb7bbd2ccaf5201cf523 -C /tmp/chan.scm -- package -p guix/new/.guix-profile -i python-umap-learn Updating channel 'guix' from Git repository at 'https://git.savannah.gnu.org/git/guix.git'... guile: warning: failed to install locale guix package: warning: Consider running 'guix pull' followed by 'guix package -u' to get up-to-date packages and security updates. updating substitutes from 'https://ci.guix.gnu.org'... 100.0% The following package will be installed: python-umap-learn 0.3.10 /gnu/store/yg68y32h1fhngn8mqpfyc8lzfg25df48-python-umap-learn-0.3.10 substitute: updating substitutes from 'https://ci.guix.gnu.org'... 100.0% building /gnu/store/fzcysynrdkz52f077c4hbrdmpwkb01nx-python-numba-0.46.0.drv... updating substitutes from 'https://ci.guix.gnu.org'... 100.0% building /gnu/store/vxf3qwhkahgzfhwp6c63vm8vky9fj5bl-python-scikit-learn-0.20.4.drv... 100% 'check' [###############################################################################################################################################################################################]builder for `/gnu/store/vxf3qwhkahgzfhwp6c63vm8vky9fj5bl-python-scikit-learn-0.20.4.drv' failed with exit code 1 build of /gnu/store/vxf3qwhkahgzfhwp6c63vm8vky9fj5bl-python-scikit-learn-0.20.4.drv failed View build log at '/gnu/var/log/guix/drvs/vx/f3qwhkahgzfhwp6c63vm8vky9fj5bl-python-scikit-learn-0.20.4.drv'. guix package: error: build of `/gnu/store/vxf3qwhkahgzfhwp6c63vm8vky9fj5bl-python-scikit-learn-0.20.4.drv' failed > [[email protected]:~] $ guix time-machine > --commit=cac674d99dc4a332e6210c57ec7f1b8164f66642 -- package -p > guix/new/.guix-profile -i python3 python-umap-learn Why this commit? 'python-umap-learn' should be broken This commit is the most recent succeeded build from 2020-04-18 19:24:20, you also suggested this commit before. > Updating channel 'guix' from Git repository at > 'https://git.savannah.gnu.org/git/guix.git'... > Updating channel 'guix-bimsb' from Git repository at > 'https://github.com/BIMSBbioinfo/guix-bimsb.git'... > Updating channel 'guix-past' from Git repository at > 'https://gitlab.inria.fr/guix-hpc/guix-past'... > Updating channel 'guix-bimsb-nonfree' from Git repository at > 'https://github.com/BIMSBbioinfo/guix-bimsb-nonfree.git'... > Computing Guix derivation for 'x86_64-linux'... WARNING: (guix build > emacs-build-system): imported module (guix build utils) overrides core > binding `delete' | > The following derivation will be built: > /gnu/store/zz2557r32hsq2ksa53ix4ygaskkrs2qi-profile.drv > The following profile hook will be built: > /gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv > building package cache... > /builder for > `/gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv' failed > to produce output path > `/gnu/store/9vpcvp00acz4lvglfs1k69a4i05p5hbw-guix-package-cache' > build of /gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv > failed > View build log at > '/gnu/var/log/guix/drvs/ya/j4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv'. > cannot build derivation > `/gnu/store/zz2557r32hsq2ksa53ix4ygaskkrs2qi-profile.drv': 1 dependencies > couldn't be built I do not know why it returns an error here. What happens if you run: guix time-machine --commit=cac674d99dc4a332e6210c57ec7f1b8164f66642 -- help ? [[email protected]:~] $ guix time-machine --commit=cac674d99dc4a332e6210c57ec7f1b8164f66642 -- help Updating channel 'guix' from Git repository at 'https://git.savannah.gnu.org/git/guix.git'... Updating channel 'guix-bimsb' from Git repository at 'https://github.com/BIMSBbioinfo/guix-bimsb.git'... Updating channel 'guix-past' from Git repository at 'https://gitlab.inria.fr/guix-hpc/guix-past'... Updating channel 'guix-bimsb-nonfree' from Git repository at 'https://github.com/BIMSBbioinfo/guix-bimsb-nonfree.git'... WARNING: (guix build emacs-build-system): imported module (guix build utils) overrides core binding `delete' Computing Guix derivation for 'x86_64-linux'... \ The following derivation will be built: /gnu/store/zz2557r32hsq2ksa53ix4ygaskkrs2qi-profile.drv The following profile hook will be built: /gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv building package cache... /builder for `/gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv' failed to produce output path `/gnu/store/9vpcvp00acz4lvglfs1k69a4i05p5hbw-guix-package-cache' build of /gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv failed View build log at '/gnu/var/log/guix/drvs/ya/j4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv'. cannot build derivation `/gnu/store/zz2557r32hsq2ksa53ix4ygaskkrs2qi-profile.drv': 1 dependencies couldn't be built guix time-machine: error: build of `/gnu/store/zz2557r32hsq2ksa53ix4ygaskkrs2qi-profile.drv' failed All the best, simon
