Hi Gavin,
Thanks a lot for the prompt check and reply.
On 3/30/19 10:43 PM, Gavin Smith wrote:
I notice that it is the latest version of texinfo.tex that is being
used. I had never uploaded that version to ftp.gnu.org; I expect
somebody has got the file directly from the git repository. In any
case, it is useful that you are testing it.
Yes, in Gnuastro we use Gnulib which is also configured to import
`texinfo.tex', and I pulled Gnulib changes yesterday.
It could be related to the change to use @ as the escape character in
the index files. Could you try running "texindex gnuastro.fn" and
"texindex gnuastro.cp" and having a look at the contents of
gnuastro.cps and gnuastro.fns afterwards? Then you could try running
"pdfetex gnuastro.texi" to see if the PDF file is created with the
indices.
This worked! After manually running `texindex' on the `gnuastro.cp' and
`gnuastro.fn', the PDF created by `make pdf' has indices. So is this due
to a mis-match between the `texinfo.tex' and my running Texinfo (with
the former being newer)?
Running "texi2pdf --verbose gnuastro.texi" might give more information
about why texindex is not being run or not being run properly.
The raw command didn't work because of all those imported files, so I
manually added `--verbose' in the Makefile where it calls `texi2pdf',
and ran `make pdf'. It is indeed printing more information, you can see
the result attached. Is it detecting the new format with the following
message?
/usr/local/bin/texi2dvi: New xref files = gnuastro.cp
Thanks a lot,
Mohammad
$ make pdf
TEXINPUTS="../bootstrapped/build-aux:$TEXINPUTS" \
MAKEINFO='/bin/bash /path/to/gnuastro/bootstrapped/build-aux/missing makeinfo
-I ../bootstrapped/doc -I . -I .' \
texi2dvi -I ../bootstrapped/doc -I . --verbose --pdf --batch
--build-dir=gnuastro.t2p -o gnuastro.pdf \
gnuastro.texi
/usr/local/bin/texi2dvi: Processing gnuastro.texi ...
/usr/local/bin/texi2dvi: Checking TeX \openout in log support...
/usr/local/bin/texi2dvi: /usr/local/bin/texi2dvi: running pdfetex
--file-line-error </dev/null '\nonstopmode' '\input' ./openout.tex ...
/usr/local/bin/texi2dvi: Checking TeX \openout in log support... yes
/usr/local/bin/texi2dvi:
BIBINPUTS='/path/to/gnuastro/doc:/path/to/gnuastro/doc/.:/path/to/gnuastro/bootstrapped/doc:/path/to/gnuastro/doc/.:'
/usr/local/bin/texi2dvi:
BSTINPUTS='/path/to/gnuastro/doc:/path/to/gnuastro/doc/.:/path/to/gnuastro/bootstrapped/doc:/path/to/gnuastro/doc/.:'
/usr/local/bin/texi2dvi:
DVIPSHEADERS='/path/to/gnuastro/doc:/path/to/gnuastro/doc/.:/path/to/gnuastro/bootstrapped/doc:/path/to/gnuastro/doc/.:'
/usr/local/bin/texi2dvi:
INDEXSTYLE='/path/to/gnuastro/doc:/path/to/gnuastro/doc/.:/path/to/gnuastro/bootstrapped/doc:/path/to/gnuastro/doc/.:'
/usr/local/bin/texi2dvi:
MFINPUTS='/path/to/gnuastro/doc:/path/to/gnuastro/doc/.:/path/to/gnuastro/bootstrapped/doc:/path/to/gnuastro/doc/.:'
/usr/local/bin/texi2dvi:
MPINPUTS='/path/to/gnuastro/doc:/path/to/gnuastro/doc/.:/path/to/gnuastro/bootstrapped/doc:/path/to/gnuastro/doc/.:'
/usr/local/bin/texi2dvi:
TEXINPUTS='/path/to/gnuastro/doc:/path/to/gnuastro/doc/.:/path/to/gnuastro/bootstrapped/doc:/path/to/gnuastro/doc/.:/path/to/gnuastro/bootstrapped/build-aux:'
/usr/local/bin/texi2dvi:
TFMFONTS='/path/to/gnuastro/doc:/path/to/gnuastro/doc/.:/path/to/gnuastro/bootstrapped/doc:/path/to/gnuastro/doc/.:'
/usr/local/bin/texi2dvi: texinfo.tex preloaded as `', version is `20190323' ...
/usr/local/bin/texi2dvi: cd gnuastro.t2p/gnuastro.t2d/pdf/build
/usr/local/bin/texi2dvi: Cycle 1 for ./gnuastro.texi
/usr/local/bin/texi2dvi: /usr/local/bin/texi2dvi: Running pdfetex
--file-line-error </dev/null '\nonstopmode' '\input'
'../../../.././gnuastro.texi' ...
This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded
format=pdfetex)
restricted \write18 enabled.
entering extended mode
(../../../.././gnuastro.texi
(/path/to/gnuastro/boots
trapped/build-aux/texinfo.tex Loading texinfo [version 2019-03-23.11]: pdf,
fonts, markup, glyphs, page headings, tables, conditionals, indexing,
sectioning, toc, environments, defuns, macros, cross references, insertions,
(/usr/local/texlive/2018/texmf-dist/tex/generic/epsf/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(/path/to/gnuastro/doc/v
ersion.texi)
(/path/to/gnuastro/doc/f
ormath.texi)
Writing index file gnuastro.cp
[1{/usr/local/texlive/2018/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]
(/path/to/gnuastro/doc/a
uthors.texi) [2] [3] [-1] [-2] Chapter 1
Cross reference values unknown; you must run TeX again. [1] [2] [3] [4]
[5] [6] [7] [8] [9] [10] [11] [12] [13] [14] Chapter 2 [15] [16] [17] [18]
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[34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48]
[49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] Chapter 3 [60] [61]
[62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76]
[77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] Chapter 4
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[116] [117] [118] [119] [120] [121] [122] [123] [124] [125] [126] Chapter 5
[127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137]
Underfull \hbox (badness 10000) in paragraph at lines 10502--10507
[]@textrm This op-tion can also in-ter-pret the older FITS date for-mat
[138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149]
[150] Chapter 6 [151] [152] [153] [154] [155] [156] [157] [158] [159] [160]
[161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172]
[173] [174] [175] [176] [177] [178] [179] [180] [181] </path/toc/gnuastro/
doc/gnuastro-figures/epicycles.png> [182] [183]
pdfTeX warning: pdfetex (file /path/to/gnuastro/doc/gnuastro-figures/
iandtime.pdf): PDF inclusion: found PDF version <1.7>, but at most version
<1.5> allowed </path/to/gnuastro/doc/gnuastro-figures/iandtime.pdf>
[184] [185] [186] [187] [188] [189] [190]
pdfTeX warning: pdfetex (file /path/to/gnuastro/doc/gnuastro-figures/
samplingfreq.pdf): PDF inclusion: found PDF version <1.7>, but at most
version <1.5> allowed </path/to/gnuastro/doc/
gnuastro-figures/samplingfreq.pdf> [191] [192] [193] [194] [195] [196] [197]
[198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] Chapter 7
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[281] [282] [283] [284] [285] Chapter 8 [286] [287] [288] [289] [290]
Underfull \hbox (badness 10000) in paragraph at lines 20467--20478
[]@textrm The or-der-ing of the pix-els in this inside-out con-struc-tion is ba
sed on
[291] [292] [293] [294] [295] [296] [297] [298] [299] [300] [301] [302]
[303] [304] [305] [306] [307] [308] [309] Chapter 9 [310] [311]
pdfTeX warning: pdfetex (file /path/to/gnuastro/doc/gnuastro-figures/
flatplane.pdf): PDF inclusion: found PDF version <1.7>, but at most version
<1.5> allowed </path/to/gnuastro/doc/gnuastro-figures/flatplane.pdf> [312]
pdfTeX warning: pdfetex (file /path/to/gnuastro/doc/gnuastro-figures/
sphereandplane.pdf): PDF inclusion: found PDF version <1.7>, but at most
version <1.5> allowed
</path/to/gnuastro/doc/gnuastro-figures/sphereandplane.pdf>
[313] [314] [315] [316] [317] [318]
[319] Chapter 10 [320] [321] [322] [323] [324] [325] [326] [327] [328] [329]
[330] [331] [332]
Writing index file gnuastro.fn
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Overfull \hbox (26.60324pt too wide) in paragraph at lines 27347--27347
[]@texttt out_3=gal_arithmetic(GAL_ARITHMETIC_OP_WHERE, 1, 0, in_1, in_2, in_3
);[] |
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[]@textrm Gnuastro's in-ter-nal head-ers (that are not in-stalled), for ex-am-
ple
[451] [452] [453] [454] [455] [456] [457] [458] [459] [460] [461] [462]
[463] [464] [465] [466] [467] Appendix A [468] [469] Appendix B [470] [471]
[472] [473] [474] Appendix C [475]
(/path/to/gnuastro/boots
trapped/doc/fdl.texi [476] [477] [478] [479] [480] [481] [482]) Appendix D
[483]
(/path/to/gnuastro/boots
trapped/doc/gpl-3.0.texi [484] [485] [486] [487] [488] [489] [490] [491]
[492] [493]) (Index: Macros, structures and functions) [494]
No file gnuastro.fns.
(Index) [495]
No file gnuastro.cps.
[496] )
(see the transcript file for additional information)pdfTeX warning (\pdffontatt
r): fonts @textsl and @defsl have conflicting attributes; I will ignore the att
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</usr/local/texlive/2018/texmf-dist/fonts/type1/public/amsfonts/cm/cmb10.pfb></
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cal/texlive/2018/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi6.pfb></usr/loca
l/texlive/2018/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/local/
texlive/2018/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi8.pfb></usr/local/te
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ive/2018/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/local/texliv
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8/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/local/texlive/2018/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/local/texlive/2018/texm
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Output written on gnuastro.pdf (501 pages, 2729471 bytes).
Transcript written on gnuastro.log.
/usr/local/bin/texi2dvi: Moving gnuastro.pdf to
/path/to/gnuastro/doc/gnuastro.pdf
/usr/local/bin/texi2dvi: Original xref files =
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gnuastro.toc
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'../../../.././gnuastro.texi' ...
This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded
format=pdfetex)
restricted \write18 enabled.
entering extended mode
(../../../.././gnuastro.texi
(/path/to/gnuastro/boots
trapped/build-aux/texinfo.tex Loading texinfo [version 2019-03-23.11]: pdf,
fonts, markup, glyphs, page headings, tables, conditionals, indexing,
sectioning, toc, environments, defuns, macros, cross references, insertions,
(/usr/local/texlive/2018/texmf-dist/tex/generic/epsf/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(/path/to/gnuastro/doc/v
ersion.texi)
(/path/to/gnuastro/doc/f
ormath.texi)
Writing index file gnuastro.cp
[1{/usr/local/texlive/2018/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]
(/path/to/gnuastro/doc/a
uthors.texi) [2] [3] (./gnuastro.toc) [-1] (./gnuastro.toc [-2] [-3] [-4]
[-5] [-6] [-7]) [-8] (./gnuastro.toc) (./gnuastro.toc) Chapter 1
(./gnuastro.aux) [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13]
[14] Chapter 2 [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26]
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[42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56]
[57] [58] [59] Chapter 3 [60] [61] [62] [63] [64] [65] [66] [67] [68] [69]
[70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84]
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[111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122]
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[134] [135] [136] [137]
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[]@textrm This op-tion can also in-ter-pret the older FITS date for-mat
[138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149]
Chapter 6 [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160]
[161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172]
[173] [174] [175] [176] [177] [178] [179] </path/to/gnuastro/doc/
gnuastro-figures/epicycles.png> [180] [181] [182]
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[197] [198] [199] [200] [201] [202] [203] [204] [205] [206] Chapter 7 [207]
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[268] [269] [270] [271] [272] [273] [274] [275] [276] [277] [278] [279]
[280] [281] [282] Chapter 8 [283] [284] [285] [286] [287]
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[]@textrm The or-der-ing of the pix-els in this inside-out con-struc-tion is ba
sed on
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[300] [301] [302] [303] [304] [305] Chapter 9 [306] [307]
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[309] [310] [311] [312] [313] [314]
Chapter 10 [315] [316] [317] [318] [319] [320] [321] [322] [323] [324] [325]
[326] [327]
Writing index file gnuastro.fn
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[]@texttt out_3=gal_arithmetic(GAL_ARITHMETIC_OP_WHERE, 1, 0, in_1, in_2, in_3
);[] |
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[442] [443] [444]
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[]@textrm Gnuastro's in-ter-nal head-ers (that are not in-stalled), for ex-am-
ple
[445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456]
[457] [458] [459] [460] [461] Appendix A [462] [463] Appendix B [464] [465]
[466] [467] [468] Appendix C [469]
(/path/to/gnuastro/boots
trapped/doc/fdl.texi [470] [471] [472] [473] [474] [475] [476]) Appendix D
[477]
(/path/to/gnuastro/boots
trapped/doc/gpl-3.0.texi [478] [479] [480] [481] [482] [483] [484] [485]
[486] [487]) (Index: Macros, structures and functions) [488]
No file gnuastro.fns.
(Index) [489]
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[490] )
(see the transcript file for additional information)pdfTeX warning (dest): name
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[]@textrm This op-tion can also in-ter-pret the older FITS date for-mat
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Chapter 6 [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160]
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[197] [198] [199] [200] [201] [202] [203] [204] [205] [206] Chapter 7 [207]
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[]@textrm The or-der-ing of the pix-els in this inside-out con-struc-tion is ba
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[466] [467] [468] Appendix C [469]
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