Hi Jeffery:

Yes, I notice the same "paraffin dust bunnies", perhaps especially since I use 
a embedding paraffin that has a fair amount of plastic.
Before I embed my brain tissue, I mix the embedding media thoroughly, until the 
solution is clear.

As for your Congo Red problem, I wish that I could help you.
I am now experiencing the same problem, except that it affects the positive 
controls as well.
The staining is there, but much fainter than it should be.

I usually immerse albumin coated slides in 1% Congo red for 15 minutes, 
differentiate them with Potassium Hydroxide for 3 dips, counterstain with 
Harris Hematoxylin for 1 minute, differentiate with acid alcohol for 5-10 dips, 
immerse in running tap water for 10 minutes, immerse in 95% ethanol for 2 dips, 
then dehydrate and mount.

Tim




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