Hi James,
Thanks you so much for quick response.
Here is the tree I got when I do printStructure(). can you give me more clue
what you mean by climinbing through untill you reach this segment. can you
give me a piece of code if you have some.
Thanks a lot again..
ORU_R01 (start)
MSH -
MSH|^~\&|UAH|20563|LIMS|BHL|20110916104341.796||ORU^R01|51582|T|2.5|1|||
PID|1|PID3|T837719||CELTEST^ALPHA||19820601000000.000|M||||||||||PID3
ORC|RE|BH006116A|B11003150||CM||||20110914080000.000|||1234567893^COLMENAR^ANTONIO^^^^^^^^^^NPI
OBR|1|BH006116A|B11003150|64^LPA
WB^BHL||20110914080000.000|20110914080000.000|20110914080000.000||||||20110915090000.000||1234567893^COLMENAR^ANTONIO^^^^^^^^^^NPI||||||20110915074501.004|||F
OBX|1|ST|67^LPA-Aspirin
Genotype^BHL^X-64-67^LPA^LN|1|ile/ile|Genotype|Note||||F|||20110914080000.000|||||20110915074236.048
NTE|1|L|This patient is homozygous for 4399Ile in the LPA NTE|2|L|gene and
does not carry the 4399Met polymorphism. The NTE|3|L|4399Ile/Ile genotype
is observed in approximately 96% of NTE|4|L|the BHL patient population.
The LPA gene encodes NTE|5|L|apolipoprotein(a), a component of plasma
lipoprotein Lp(a). NTE|6|L| The 4399Met polymorphism (rs3798220) [Human
Genome NTE|7|L| Variation Society nucleotide position NTE|8|L|
NM_005577.2:c.5673A>G] has been associated with elevated NTE|9|L| Lp(a)
levels and cardiovascular disease (CVD). Position NTE|10|L| 4399 of the
LPA gene is also referred to as NTE|11|L| position 1891 in public genome
databases. In the WomenxE2x80x99s NTE|12|L| Health Study, the CVD risk
associated with the 4399Met NTE|13|L| polymorphism was ameliorated by
low-dose aspirin therapy. NTE|14|L| Of note, the CVD risk associated with
the 4399Met NTE|15|L| polymorphism and the amelioration by aspirin therapy
has NTE|16|L| thus far only been observed in a Caucasian population.
NTE|17|L| NTE|18|L|Non genetic factors contribute to coronary heart
disease NTE|19|L|(CHD), cardiovascular disease (CVD), or myocardial
NTE|20|L|infraction (MI) risk. Examples of such factors include
NTE|21|L|smoking, hypertension, age, diabetes, elevated blood lipid
NTE|22|L|levels, obesity and sedentary lifestyle. NTE|23|L| NTE|24|L|Other
genetic factors (e.g. family history of heart NTE|25|L|disease) may
contribute to CHD, CVD, or MI
[ { SFT } ] - SFT
PATIENT_RESULT (start)
{
PATIENT (start)
[
PID - PID
[ PD1 ] - PD1
[ { NTE } ] - NTE
[ { NK1 } ] - NK1
VISIT (start)
[
PV1 - PV1
[ PV2 ] - PV2
]
VISIT (end)
]
PATIENT (end)
ORDER_OBSERVATION (start)
{
[ ORC ] - ORC
OBR - Not populated
[ { NTE } ] - Not populated
TIMING_QTY (start)
[{
TQ1 - Not populated
[ { TQ2 } ] - Not populated
}]
TIMING_QTY (end)
[ CTD ] - Not populated
OBSERVATION (start)
[{
OBX - Not populated
[ { NTE } ] - Not populated
}]
OBSERVATION (end)
[ { FT1 } ] - Not populated
[ { CTI } ] - Not populated
SPECIMEN (start)
[{
SPM - Not populated
[ { OBX } ] - Not populated
}]
SPECIMEN (end)
}
ORDER_OBSERVATION (end)
}
PATIENT_RESULT (end)
[ DSC ] - Not populated
ORU_R01 (end)
On Tue, Sep 20, 2011 at 5:00 AM, James Agnew <ja...@jamesagnew.ca> wrote:
> Hi Mike,
>
> You're pretty close actually. To get the NTE object, you actually need to
> retrieve it by climbing through the ORU_R01 structure, by calling it's
> getRESPONSE() message, and going down the various levels of the structure
> until you reach the NTE segment. You can call
> System.out.println(hapiMsg.printStructure()); to find out where the NTE
> segment is within the structure.
>
> Good luck!
>
> Cheers,
> James
>
>
>
> On Mon, Sep 19, 2011 at 3:07 PM, Gopi Krishna Meka <gme...@gmail.com>wrote:
>
>> static int getNTEReps(String hl7Message)throws Exception{
>>
>> Message hapiMsg = null;
>> Parser p = new GenericParser();
>> p.setValidationContext(null);
>> try {
>> hapiMsg = p.parse(hl7Message);
>> } catch (Exception e) {
>> e.printStackTrace();
>> }
>> Terser terser = new Terser(hapiMsg);
>> try {
>> ORU_R01 getNte = (ORU_R01)hapiMsg;
>>
>> NTE nte = new NTE(getNte, null);
>> int reps=nte.getNte3_CommentReps();
>>
>> String comment = nte.getNte3_Comment(0).getValue();
>>
>> } catch (Exception e) {
>> Logger.fatal(e);
>> }
>> return reps;
>> }
>>
>> *HL7 Message:*
>> MSH|^~\&|SITE|212121|MYSITE|29992|20110916104341.796||ORU^R01|51582|T|2.3|1|||
>> PID|1|PID3|T837719||CELTEST^ALPHA||19820601000000.000|M||||||||||PID3
>> ORC|RE|BH006116A|B11003150||CM||||20110914080000.000|||1234567893^COLMENAR^ANTONIO^^^^^^^^^^NPI
>> OBR|1|BH006116A|B11003150|64^LPA
>> WB^BHL||20110914080000.000|20110914080000.000|20110914080000.000||||||20110915090000.000||1234567893^COLMENAR^ANTONIO^^^^^^^^^^NPI||||||20110915074501.004|||F
>> OBX|1|ST|67^LPA-Aspirin
>> Genotype^BHL^X-64-67^LPA^LN|1|ile/ile|Genotype|Note||||F|||20110914080000.000|||||20110915074236.048
>> NTE|1|L|This patient is homozygous for 4399Ile in the LPA NTE|2|L|gene and
>> does not carry the 4399Met polymorphism. The NTE|3|L|4399Ile/Ile genotype is
>> observed in approximately 96% of NTE|4|L|the BHL patient population. The
>> LPA gene encodes NTE|5|L|apolipoprotein(a), a component of plasma
>> lipoprotein Lp(a). NTE|6|L| The 4399Met polymorphism (rs3798220) [Human
>> Genome NTE|7|L| Variation Society nucleotide position NTE|8|L|
>> NM_005577.2:c.5673A>G] has been associated with elevated
>> NTE|9|L| Lp(a) levels and cardiovascular disease (CVD). Position
>> NTE|10|L| 4399 of the LPA gene is also referred to as
>> NTE|11|L| position 1891 in public genome databases. In the
>> Women\xE2\x80\x99s
>> NTE|12|L| Health Study, the CVD risk associated with the 4399Met
>> NTE|13|L| polymorphism was ameliorated by low-dose aspirin therapy.
>> NTE|14|L| Of note, the CVD risk associated with the 4399Met
>> NTE|15|L| polymorphism and the amelioration by aspirin therapy has
>> NTE|16|L| thus far only been observed in a Caucasian population.
>> NTE|17|L|
>> NTE|18|L|Non genetic factors contribute to coronary heart disease
>> NTE|19|L|(CHD), cardiovascular disease (CVD), or myocardial
>> NTE|20|L|infraction (MI) risk. Examples of such factors include
>> NTE|21|L|smoking, hypertension, age, diabetes, elevated blood lipid
>> NTE|22|L|levels, obesity and sedentary lifestyle.
>> NTE|23|L|
>> NTE|24|L|Other genetic factors (e.g. family history of heart
>> NTE|25|L|disease) may contribute to CHD, CVD, or MI
>>
>>
>> On Mon, Sep 19, 2011 at 11:52 AM, James Agnew <ja...@jamesagnew.ca>wrote:
>>
>>> Hi Mike,
>>>
>>> (Mike, sorry, I'm reposting this a second time because I forgot to cc the
>>> list itself. Please reply to this message)
>>>
>>>
>>> Would you be able to post a complete code sample illustrating what is not
>>> working? It sounds like you're doing the right thing.
>>>
>>> Cheers,
>>> James
>>>
>>> On Mon, Sep 19, 2011 at 1:16 PM, Gopi Krishna Meka <gme...@gmail.com>wrote:
>>>
>>>> Hi all,
>>>>
>>>> My Name is mike. I am totally new to HL7 standards.
>>>> I am using this methods to get repetitions of comment in NTE-03. Even
>>>> there is multiple NTE's it return 0.
>>>>
>>>> My requirement is to get the NTE repetetions and check each for if any
>>>> blank comments(if NTE_03 is blank) add a string "Intentionally Left Blank".
>>>> can some Help me with this. I'm using ORM_R01 2.3 version.
>>>> Any suggestions is greatly appreciated
>>>>
>>>>
>>>> -- Thanks,
>>>> Mike
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> ------------------------------------------------------------------------------
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>>>>
>>>>
>>>
>>
>>
>> --
>>
>>
>> Regards,
>> Gopi Krishna Meka,
>> +(484)-238-4139
>>
>>
>>
>
--
Regards,
Gopi Krishna Meka,
+(484)-238-4139
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