Marko, Petros & Ramana, I use Emacs & miz3, with a minimal interface 
hol_light/RichterHilbertAxiomGeometry/hol-light-fonts.el
which mostly allows writing HOL Light code with math characters.  The Isabelle 
folks are phasing out ProofGeneral in favor of jedit.  I would like to have 
automatic indentation, so TAB would move you where in the correctly indented 
place.  I've seen this for Scheme code.  I imagine that's only a few lines of 
Emacs code, but I haven't written it.  Another Emacs point is that evaluating 
code in an Emacs shell is a good idea, because you can then look at thousands 
of lines of output: there's no scroll limit.  Freek's paper 
arxiv.org/pdf/1201.3601 sorta gives the impression that you need an interface 
to use miz3, but you can just paste code from your editor into the window 
running ocaml.  I don't know what the HOL4 Emacs support does.

-- 
Best,
Bill 

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