I'm not convinced that the number of control points is a good measure for the 
"quality" of the control points. In other projects there can also be image 
pairs with only 2 control points, but these can be essential to keep all images 
together.
So simply use the number is in general a bad idea and I will not implement it.

I see that it may be helpful in your case. But you are using very difficult 
images, where all building are more or less the same gray level.
So in this case it could be a solution to use the "--linearmatch" option in 
cpfind to prevent generating "wrong" control points in the first place instead 
of trying to remove the wrong one later.

** Changed in: hugin
       Status: New => Won't Fix

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https://bugs.launchpad.net/bugs/1499871

Title:
  Add feature to dissociate image pairs based off of total control point
  count

Status in Hugin:
  Won't Fix

Bug description:
  I had a project where automatic control point creation managed to
  connect virtually all overlapping images together, but stitching was
  rendered impossible due to each image also having a high number of low
  quality connections with completely unrelated images.

  Example 1 - low quality control points: http://i.imgur.com/weP0mRG.png
  Example 2 - note that none of the images with less than six control points 
actually overlap: http://i.imgur.com/5igA2VZ.png
  Example 3 - the best stitch I could get using built-in cp cleaning and 
optimization tools: http://i.imgur.com/dSm7LFW.png

  By writing a python script to delete all control points between any
  image pairs with a lower-than-typical control point count, I managed
  to get it to stitch properly.

  http://i.imgur.com/ycUqr30.png
  http://i.imgur.com/qsHhv6r.png

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