OK so using hugin I'm trying to make a multiple layer single output
panorama for further editing in photo shop
On    http://wiki.panotools.org/Hugin_FAQ     it says

"How can I postprocess the image using multiple layers in The Gimp?

    * Use the nona stitcher on the command-line, to output to a
multilayer TIFF format:

 nona -m TIFF_multilayer -o multi_layer.tif project.pto

This will will produce a multi_layer.tif file, that contains all
remapped images, cropped to their bounding box.

    * Alternatively select the Remapped Images option in the Hugin
Stitcher tab, this will create each layer as a separate file. Then use
the tiffcp command-line tool (part of libtiff) to join them together
into a multi-page TIFF:

 tiffcp project0000.tif project0001.tif project0002.tif
multi_layer.tif  "

my problem is i don't know where to put those commands
under Nona theres no place to post command line

Do i past it under enfuse or enblend or am i missing something

Also i have most current version of Hugin

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