Could be because of the photometric optimization going awry and causing the 
camera response to be wrong? Can you put an example somewhere, or source 
files (downsized perhaps) to make diagnosis easier? I assume you used the 
automated assistant?

Cheers,
Daniel.

On Saturday, September 21, 2013 10:58:20 PM UTC+1, Ronald Waterbury wrote:
>
> I’ve just installed Hugin and am trying my first stitch job.  I went 
> through the routine to stitch two jpeg photos but the final panoramic 
> output has weird colors, almost as if it were shot at night with infrared, 
> which it definitely was not. 
>

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