On Thursday, March 20, 2014 7:30:17 PM UTC+1, Mario Modesto wrote:
>
> Hello everybody,
>
> As the title sais, I recently obtained several images from a simple sample 
> with a microscope. And I would like to stitch them without deforming them. 
> How can it be done using Hugin?
>

To put it simply, you want to stitch them in mosaic mode. For your input 
images, assume a rectilinear lens and assign an arbitrary horizontal field 
of view - just use a small value. The only parameters you should need to 
optimize are x and y, I don't think you should have much trouble with lens 
distortion but if you do you can try optimizing a, b and maybe c, but try 
without first. I would try using cpfind for the control points, possibly 
with a setting which will give you more control points than usual - try 
something like --fullscale --sieve2size 5 -o %o %s

Output would be rectilinear, it shouldn't be difficult to get it to work, 
since you have so few parameters to play with. I do assume you are using a 
mechanical stage, if not you need to optimize for r (roll) as well. And you 
shouldn't refocus from one image to the next, because that will confuse the 
control point generator, which needs identical bits of image to recognize, 
and with the very small depth of field of microscopic images a small change 
in focus may make it impossible for the cpg to do it's job - the problem 
will be more pronounced with higher magnifications.

One more thing: make sure your microscope is köhlered precisely - see 
http://en.wikipedia.org/wiki/K%C3%B6hler_illumination

Kay


> Thanks
> Mario
>

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