I'm a little bit lost with your information. I don't understand all you 
tried.

Am Samstag, 28. Juli 2018 17:06:06 UTC+2 schrieb [email protected]:
>
> 1)      Using the original .pto file and original unaligned 2016 photo 
> set.  This does work, an reproduces the aligned photographs that can be 
> seen in the video
>
That's expecting. 

2)      Using the original .pto file with new photographs.  This doesn’t 
> work- photos don’t align.
>
 How can the original pto file work with new photographs? Simply replacing 
the image file? This won't work - you need to create the control points for 
the new images and optimize again.

3)      Using the original .pto tile with the 2016 photos *and* the 2018 
> photos in one set.  (I obviously create some new control points to do 
> this).  This doesn’t work on the 2018 photos, although interestingly, it 
> still aligns the 2016 ones
>
After creating the new control point did you reoptimized the project? 
Simply creating cp is not enough.

4)      Creating a new .pto file, and using this on the new photos only.  This 
> doesn’t work- photos don’t align. 
>
How did you created the new pto file? Hugin should align the images: either 
running the assistant after loading the images or create control points and 
optimize the position manually should result in an aligned result.

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