My system is "normal" to me : i686 native gcc compiler, but gfortran << $ gfortran -dumpversion GNU Fortran (GCC) 4.3.0 20071030 (experimental) [trunk revision 129762] Copyright (C) 2007 Free Software Foundation, Inc.
GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING $ gcc -dumpversion 4.3.0 >> Configure full output with gfortran in the path: << [root@valerie hwloc-1.0.1]# ./configure --enable-debug && make && make install ### ### Configuring hwloc distribution tarball ### Startup tests ### checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking target system type... i686-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking how to create a ustar tar archive... gnutar checking for hwloc version... 1.0.1 checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking whether gcc and cc understand -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes ### ### Configuring hwloc core ### checking hwloc building mode... standalone configure: hwloc builddir: /tmp/hwloc-1.0.1 configure: hwloc srcdir: /tmp/hwloc-1.0.1 checking if want hwloc maintainer support... enabled checking for hwloc directory prefix... (none) checking for hwloc symbol prefix... hwloc_ checking for gcc option to accept ISO C99... -std=gnu99 checking size of void *... 0 checking which OS support to include... Linux checking which CPU support to include... unknown -- assuming x86_64 checking whether diff accepts -u... -u checking size of unsigned long... 0 checking size of unsigned int... 0 checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(format)... no checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(nonnull)... no checking for __attribute__(noreturn)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... no checking for __attribute__(unused)... yes checking for __attribute__(warn_unused_result)... yes checking for __attribute__(weak_alias)... yes checking if gcc supports -fvisibility... yes checking enable symbol visibility... yes configure: WARNING: " -fvisibility=hidden" has been added to hwloc's CFLAGS checking for inline compatibility keyword... __inline__ checking for strncasecmp... yes checking whether function strncasecmp is declared... yes checking for stdint.h... (cached) yes checking for wchar_t... yes checking for putwc... yes checking locale.h usability... no checking locale.h presence... yes configure: WARNING: locale.h: present but cannot be compiled configure: WARNING: locale.h: check for missing prerequisite headers? configure: WARNING: locale.h: see the Autoconf documentation configure: WARNING: locale.h: section "Present But Cannot Be Compiled" configure: WARNING: locale.h: proceeding with the compiler's result configure: WARNING: ## ------------------------------------------------------ ## configure: WARNING: ## Report this to http://www.open-mpi.org/community/help/ ## configure: WARNING: ## ------------------------------------------------------ ## checking for locale.h... no checking langinfo.h usability... no checking langinfo.h presence... yes configure: WARNING: langinfo.h: present but cannot be compiled configure: WARNING: langinfo.h: check for missing prerequisite headers? configure: WARNING: langinfo.h: see the Autoconf documentation configure: WARNING: langinfo.h: section "Present But Cannot Be Compiled" configure: WARNING: langinfo.h: proceeding with the compiler's result configure: WARNING: ## ------------------------------------------------------ ## configure: WARNING: ## Report this to http://www.open-mpi.org/community/help/ ## configure: WARNING: ## ------------------------------------------------------ ## checking for langinfo.h... no checking curses.h usability... no checking curses.h presence... yes configure: WARNING: curses.h: present but cannot be compiled configure: WARNING: curses.h: check for missing prerequisite headers? configure: WARNING: curses.h: see the Autoconf documentation configure: WARNING: curses.h: section "Present But Cannot Be Compiled" configure: WARNING: curses.h: proceeding with the compiler's result configure: WARNING: ## ------------------------------------------------------ ## configure: WARNING: ## Report this to http://www.open-mpi.org/community/help/ ## configure: WARNING: ## ------------------------------------------------------ ## checking for curses.h... no checking for KAFFINITY... no checking for PROCESSOR_CACHE_TYPE... no checking for CACHE_DESCRIPTOR... no checking for LOGICAL_PROCESSOR_RELATIONSHIP... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no checking for GROUP_AFFINITY... no checking for PROCESSOR_RELATIONSHIP... no checking for NUMA_NODE_RELATIONSHIP... no checking for CACHE_RELATIONSHIP... no checking for PROCESSOR_GROUP_INFO... no checking for GROUP_RELATIONSHIP... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no checking for main in -lgdi32... no checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking sys/lgrp_user.h usability... no checking sys/lgrp_user.h presence... no checking for sys/lgrp_user.h... no checking kstat.h usability... no checking kstat.h presence... no checking for kstat.h... no checking infiniband/verbs.h usability... no checking infiniband/verbs.h presence... no checking for infiniband/verbs.h... no checking whether _SC_NPROCESSORS_ONLN is declared... yes checking whether _SC_NPROCESSORS_CONF is declared... yes checking whether _SC_NPROC_ONLN is declared... no checking whether _SC_NPROC_CONF is declared... no checking whether _SC_LARGE_PAGESIZE is declared... no checking mach/mach_host.h usability... no checking mach/mach_host.h presence... no checking for mach/mach_host.h... no checking mach/mach_init.h usability... no checking mach/mach_init.h presence... no checking for mach/mach_init.h... no checking sys/param.h usability... no checking sys/param.h presence... yes configure: WARNING: sys/param.h: present but cannot be compiled configure: WARNING: sys/param.h: check for missing prerequisite headers? configure: WARNING: sys/param.h: see the Autoconf documentation configure: WARNING: sys/param.h: section "Present But Cannot Be Compiled" configure: WARNING: sys/param.h: proceeding with the compiler's result configure: WARNING: ## ------------------------------------------------------ ## configure: WARNING: ## Report this to http://www.open-mpi.org/community/help/ ## configure: WARNING: ## ------------------------------------------------------ ## checking for sys/param.h... no checking for sys/sysctl.h... no checking for sysctl... yes checking for sysctlbyname... no checking for pthread_t... yes checking whether function sched_setaffinity is declared... yes checking for old prototype of sched_setaffinity... no checking for working CPU_SET... yes checking for working CPU_SET_S... no checking for KERRIGHED... no checking for lib... no checking for bash... /bin/sh checking for ffs... yes checking whether function ffs is declared... yes checking for ffsl... yes checking whether function ffsl is declared... yes checking for fls... no checking for flsl... no checking for clz... no checking for clzl... no checking for openat... no checking whether numa_bitmask_alloc is declared... no checking pthread_np.h usability... no checking pthread_np.h presence... no checking for pthread_np.h... no checking whether pthread_setaffinity_np is declared... no checking whether pthread_getaffinity_np is declared... no checking for sched_setaffinity... yes checking for sys/cpuset.h... no checking for cpuid... yes checking for X... libraries /usr/X11R6/lib, headers /usr/X11R6/include ### ### Configuring hwloc documentation ### checking if this is a developer build... no (doxygen generation is optional) checking for doxygen... no checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for fig2dev... /usr/X11R6/bin/fig2dev checking if can build doxygen docs... no checking for w3m... no checking for lynx... /usr/bin/lynx checking if can build top-level README... yes checking if will build doxygen docs... no checking if will install doxygen docs... yes checking whether to enable "picky" compiler mode... no (default) ### ### Configuring hwloc command line utilities ### checking for CAIRO... no checking for XML... yes checking for xmlNewDoc... yes checking for final XML support... yes checking for xmllint... xmllint ### ### Configuring hwloc tests ### checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 98304 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... no checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for dlfcn.h... no checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no configure: creating ./config.status config.status: creating Makefile config.status: creating include/Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating doc/doxygen-config.cfg config.status: creating utils/Makefile config.status: creating hwloc.pc config.status: creating tests/Makefile config.status: creating tests/linux/Makefile config.status: creating tests/xml/Makefile config.status: creating tests/ports/Makefile config.status: creating tests/linux/gather-topology.sh config.status: creating tests/linux/test-topology.sh config.status: creating tests/xml/test-topology.sh config.status: creating utils/test-hwloc-distrib.sh config.status: creating include/private/config.h config.status: creating include/hwloc/config.h config.status: linking src/topology.c to tests/ports/topology.c config.status: linking src/traversal.c to tests/ports/traversal.c config.status: linking src/topology-synthetic.c to tests/ports/topology-synthetic.c config.status: linking src/topology-solaris.c to tests/ports/topology-solaris.c config.status: linking src/topology-aix.c to tests/ports/topology-aix.c config.status: linking src/topology-osf.c to tests/ports/topology-osf.c config.status: linking src/topology-windows.c to tests/ports/topology-windows.c config.status: linking src/topology-darwin.c to tests/ports/topology-darwin.c config.status: linking src/topology-freebsd.c to tests/ports/topology-freebsd.c config.status: linking src/topology-hpux.c to tests/ports/topology-hpux.c config.status: executing depfiles commands config.status: executing chmoding-scripts commands config.status: executing libtool commands Making all in src make[1]: Entering directory `/tmp/hwloc-1.0.1/src' CC topology.lo In file included from topology.c:17: /opt/gfortran/irun/bin/../lib/gcc/i386-pc-linux-gnu/4.3.0/include-fixed/sys/stat.h:345: error: expecte d ',' or ';' before '__wur' In file included from /tmp/hwloc-1.0.1/include/hwloc.h:17, from topology.c:21: /tmp/hwloc-1.0.1/include/hwloc/config.h:115:2: error: #error "unknown size for unsigned long." /tmp/hwloc-1.0.1/include/hwloc/config.h:119:2: error: #error "unknown size for unsigned int." topology.c: In function 'hwloc_get_sysctl': topology.c:66: warning: implicit declaration of function 'sysctl' make[1]: *** [topology.lo] Erreur 1 make[1]: Leaving directory `/tmp/hwloc-1.0.1/src' make: *** [all-recursive] Erreur 1 >> Cheers, Olivier. Le dimanche 06 juin 2010 à 20:13 +0200, Samuel Thibault a écrit : > Olivier Cessenat, le Sun 06 Jun 2010 19:02:21 +0200, a écrit : > > Le dimanche 06 juin 2010 à 18:39 +0200, Samuel Thibault a écrit : > > > Olivier Cessenat, le Sun 06 Jun 2010 18:14:35 +0200, a écrit : > > > > In file included from topology.c:17: > > > > /opt/gfortran/irun/bin/../lib/gcc/i386-pc-linux-gnu/4.3.0/include-fixed/sys/stat.h:345: > > > > error: expected ',' or ';' before '__wur' > > > > > > Wow, how odd. Could you send us the file? I really wonder what they > > > put there that errors out like this. > > ==> > > Yes, joined. I do not know why this header is used instead of the > > standard one... I do not see the connection with gfortran ! > > I don't see it either, and I don't see how hwloc could make that line > fail. It properly includes <sys/types.h> before including <sys/stat.h>, > so at least it respects the standard rules. Your stat.h comes from /opt, > maybe you should post the complete output of ./configure to check which > mixture of compilers you are using, and maybe try to get odd compilers > out from PATH. > > > > > In file included from /tmp/hwloc-1.0.1/include/hwloc.h:17, > > > > from topology.c:21: > > > > /tmp/hwloc-1.0.1/include/hwloc/config.h:115:2: error: #error "unknown > > > > size for unsigned long." > > > > /tmp/hwloc-1.0.1/include/hwloc/config.h:119:2: error: #error "unknown > > > > size for unsigned int." > > > > > > Could you tell us how much HWLOC_SIZEOF_UNSIGNED_LONG is defined to? > > > This looks like autoconf wasn't able to properly determine it actually. > > ==> > > What should I do exactly ? I do not see HWLOC_SIZEOF_UNSIGNED_LONG from > > configure ouput. > > Here is what find gives: > > $ find . -name \*.h -exec grep HWLOC_SIZEOF_UNSIGNED_LONG {} /dev/null > > \; > > ./include/hwloc/config.h:#define HWLOC_SIZEOF_UNSIGNED_LONG 4 > > ./include/hwloc/config.h:#define HWLOC_BITS_PER_LONG > > (HWLOC_SIZEOF_UNSIGNED_LONG * 8) > > ./include/private/config.h:#define HWLOC_SIZEOF_UNSIGNED_LONG 4 > > So it's 4. I fail to see how your compiler could not see that 4*8 is > equal to 32.. > > > Oh, by the way, there are some messages provided by configure: > > << > > checking locale.h presence... yes > > configure: WARNING: locale.h: present but cannot be compiled > > configure: WARNING: locale.h: check for missing prerequisite > > headers? > > This looks like your compiler is a cross-compiler or some odd thing like > that which autoconf doesn't always correctly handle concerning headers. > > Samuel > _______________________________________________ > hwloc-users mailing list > hwloc-us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/hwloc-users
