Here's the fixed XML. For the record, for each NUMA node, I extended the cpusets of the L3 to match the container NUMA node, and moved all L2 objects as children of that L3. Now you may load that XML instead of the native discovery by setting HWLOC_XMLFILE=leo2.xml in your environment. Brice
Le 27/10/2015 10:08, Fabian Wein a écrit : > Brice, > > thank you very much for the offer. I attached the xml file > .. > > * hwloc 1.11.1 has encountered what looks like an error from the > operating system. > * > * L3 (cpuset 0x000003f0) intersects with NUMANode (P#0 cpuset > 0x0000003f) without inclusion! > * Error occurred in topology.c line 981 > * > .. > > So if you can affort the time, I apprechiate it very much! > > Fabian > > > > On 10/27/2015 09:52 AM, Brice Goglin wrote: >> Hello >> >> This bug is about L3 cache locality only, everything else should be >> fine, including cache sizes. Few applications use that locality >> information, so I assume it doesn't matter for PETSc scaling. >> We can work around the bug by loading a XML topology. There's no easy >> way to build that correct XML, but I can do it manually if you send your >> current broken topology (lstopo foo.xml and send this foo.xml). >> >> Brice >> >> >> >> Le 27/10/2015 09:43, Fabian Wein a écrit : >>> Hello, >>> >>> I'm new to the list and new to the mpi-business, too. >>> >>> Our 4*12 Opteron 6238 system is very similar to the one from the >>> original poster and I get the same error message. >>> Any use in posting my logs? >>> >>> I compiled the latest hwloc, no change. our System is Ubunut 14.4 LTS >>> with kernel 3.13. and our bios is not updated. >>> >>> The system scales very fine with OpenMP but fails to give any >>> realistic scaling using PETSc (both for the standard >>> streaming benchmark and quick tests with a given application). >>> >>> As far as I understand the system is fine, just the information >>> gathering fails, right?! >>> >>> Do you know if the hwloc issue relates with our poor PETSc scaling? Is >>> there a way to configure the topology >>> manually? >>> >>> To me it appears that an bios update wouldn't help, right?! I wouldn't >>> try it if it is not nesessary. I'm a user with sudo accesss, >>> not an administrator but we have no admin for the system. >>> >>> Thanks, >>> >>> Fabian >>> _______________________________________________ >>> hwloc-users mailing list >>> hwloc-us...@open-mpi.org >>> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/hwloc-users >>> Link to this post: >>> http://www.open-mpi.org/community/lists/hwloc-users/2015/10/1201.php >> >> _______________________________________________ >> hwloc-users mailing list >> hwloc-us...@open-mpi.org >> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/hwloc-users >> Link to this post: >> http://www.open-mpi.org/community/lists/hwloc-users/2015/10/1204.php >> > > > > _______________________________________________ > hwloc-users mailing list > hwloc-us...@open-mpi.org > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/hwloc-users > Link to this post: > http://www.open-mpi.org/community/lists/hwloc-users/2015/10/1205.php
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