Hello, This does not really seem like a valid GraphML file; it seems like a GEXF file with the GraphML root tag. (I know this does not mean much to you if you have a biology background). How did you manage to read it into Cytoscape? As far as I know, Cytoscape does not support GraphML input natively. How did you produce this GraphML file?
-- T. On Thursday, 8 March 2012 at 16:25, Delphine Faugaret wrote: > Here it comes > > Delph > > De : Tamás Nepusz <[email protected] (mailto:[email protected])> > À : Delphine Faugaret <[email protected] > (mailto:[email protected])>; Help for igraph users > <[email protected] (mailto:[email protected])> > Envoyé le : Jeudi 8 mars 2012 16h22 > Objet : Re: [igraph] read.graph do not upload my network > > Hello, > > Please send us your GraphML file to see if igraph has exported it correctly. > > -- > T. > > > On Thursday, 8 March 2012 at 16:21, Delphine Faugaret wrote: > > > Hello, > > > > I created a network (around 100 of nodes, undirected, no loops, some nodes > > are isolated) in graphml. I checked that I could see the network using > > Gephi or cytoscape to be sure that I wrote everything correctly, and it > > works. > > But when I use the function read.graph (read.graph("networks.graphml", > > format="graphml")). Of course the line before I specificied the pathway to > > find my file. > > I've got the following answer: Vertices 0, Edges 0, Directed:False. > > > > What did I do wrong? > > > > Delph > > _______________________________________________ > > igraph-help mailing list > > [email protected] (mailto:[email protected]) > > (mailto:[email protected]) > > https://lists.nongnu.org/mailman/listinfo/igraph-help > > > > Attachments: > - networkstaIFNG3hML.graphml > _______________________________________________ igraph-help mailing list [email protected] https://lists.nongnu.org/mailman/listinfo/igraph-help
