Ok, I have fixed this. I can send you a source R package if you like,
or you can download one from or nightly build server at
https://code.google.com/p/igraph/downloads/list (possibly only
tomorrow or the day after tomorrow).

You can fix it for yourself as well if you prefer that, you need the
changes in the indexing.R file:
http://bazaar.launchpad.net/~igraph/igraph/0.6-main/revision/2991

Thanks for taking the time to report this!

Best,
Gabor

On Wed, Oct 31, 2012 at 4:17 PM, Gábor Csárdi <[email protected]> wrote:
> On Wed, Oct 31, 2012 at 3:57 PM, Tony Larson <[email protected]> wrote:
>> The problem occurs when replacing all the edges with a vector of new edges
>> and one or more values in the new vector is a zero.  It doesn't occur if a
>> subset of edges is selected.
>
> Indeed, sorry, I overlooked this, I was in a rush. It is indeed a bug,
> I'll fix it asap, here is a bug report for it:
> https://bugs.launchpad.net/igraph/+bug/1073705
>
> G.
>
> [...]



-- 
Gabor Csardi <[email protected]>     MTA KFKI RMKI

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