Hi,
As for the info that you ask:
> sessionInfo()
R version 2.15.2 (2012-10-26)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets
[6] methods base
other attached packages:
[1] igraph_0.6-3
MacOS 10.8
And I couldn't find the gcc version.
I did load the igraph, and the library(tcltk) as you suggested and got the same
message and options to quit R. You are right that I don't need to start
XQuarts in order to get graphics, but when I plot the window is a Quarts device.
> library(tcltk)
Loading Tcl/Tk interface ...
*** caught segfault ***
address 0x20044, cause 'memory not mapped'
Traceback:
1: sys.nframe()
2: dynGet("__NameSpacesLoading__", NULL)
3: loadNamespace(package, c(which.lib.loc, lib.loc))
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch(expr, error = function(e) { call <- conditionCall(e) if
(!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch)))
call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <-
paste("Error in", dcall, ": ") LONG <- 75L msg <-
conditionMessage(e) sm <- strsplit(msg, "\n")[[1L]] w <- 14L +
nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w))
w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type
= "b") if (w > LONG) prefix <- paste0(prefix, "\n ") }
else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n")
.Internal(seterrmessage(msg[1L])) if (!silent &&
identical(getOption("show.error.messages"), TRUE)) { cat(msg,
file = stderr()) .Internal(printDeferredWarnings()) }
invisible(structure(msg, class = "try-error", condition = e))})
8: try({ ns <- loadNamespace(package, c(which.lib.loc, lib.loc))
dataPath <- file.path(which.lib.loc, package, "data") env <-
attachNamespace(ns, pos = pos, dataPath = dataPath, deps)})
9: library(igraph)
Possible actions:
1: abort (with core dump, if enabled)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace
>
Selection:
S
El 17/11/2012, a las 16:39, Gábor Csárdi <[email protected]> escribió:
>
> On Sat, Nov 17, 2012 at 5:29 PM, Silvia Solis <[email protected]> wrote:
> Hi,
>
> The Quartz is apparently the graphic device in R for Mac.
>
> Yes, but you don't need Xquartz or even an X server to plot to a quartz
> device. Start start R from a terminal and type plot(1:10) and it will be
> plotted on a quartz device, even if you don't start an X server.
>
> An X server is optional and only needed if you want to plot to an X11 device.
> Actually I was wrong and not all OSX versions have an X server included. But
> as I said, you don't need an X server, anyway.
>
> See sections 7 (Quartz) and 8 (Tcl/Tk issues) from this FAQ for Mac users,
> that's what I followed:
>
> http://cran.r-project.org/bin/macosx/RMacOSX-FAQ.html#How-to-install-packages
>
> You mean you did
>
> install.packages("igraph")
>
> ? That is good.
>
> I'm not sure if is necessary to install the Quarts in order the get the
> graphics,
>
> It is not, AFAIK. I can happily plot without having the X server running.
>
> Gabor
>
> but the R console have a tab for it. I installed the latest versions of
> everything, and I have the tcltk interface on my package manager.
> I'm going to try loading as you say.
>
> Thanks for the answers, I'll let you know if it worked
>
> S
>
> El 17/11/2012, a las 14:10, Gábor Csárdi <[email protected]> escribió:
>
>> Hi,
>>
>> I am not sure what is XQuartz, but you don't need it at all. There is an X
>> server in OSX, AFAIK, unless you are using a very old version. But the X
>> server might not matter for the bug, anyway.
>>
>> What is your igraph version? R version? Output of sessionInfo()? OSX
>> version? gcc version? Even with these, it seems hard to reproduce this bug,
>> without these it is impossible.
>>
>> Btw. if you just load the tcktk package with 'library(tcltk)', does that
>> work?
>>
>> Gabor
>>
>>
>> On Sat, Nov 17, 2012 at 12:46 PM, Silvia SM <[email protected]> wrote:
>> Hello,
>>
>> Maybe someone can help me. I just switch to Mac, and I'm trying to use the
>> "tkplot" function, but I get this error and message when the program tries
>> to load the tcl/tk interface, and I cannot continue working, I have the
>> XQuartz 2.7.4 (xorg-server 1.13.0), and the tcltk interface and additions on
>> my package manager list. I'm I missing something?
>>
>>
>>
>> > tkigraph()
>> Loading required package: tcltk
>> Loading Tcl/Tk interface ...
>> *** caught segfault ***
>> address 0x0, cause 'unknown'
>>
>> Traceback:
>> 1: sys.parent()
>> 2: sys.function(sys.parent())
>> 3: formals(sys.function(sys.parent()))
>> 4: match.arg(encoding)
>> 5: match(match.arg(encoding), c("", "bytes", "UTF-8"))
>> 6: textConnection("rval", "w", local = TRUE)
>> 7: capture.output(print(args(setwd)))
>> 8: paste(capture.output(print(args(setwd))), collapse = "")
>> 9: gsub("\\s+", " ", paste(capture.output(print(args(setwd))), collapse =
>> ""))
>> 10: doTryCatch(return(expr), name, parentenv, handler)
>> 11: tryCatchOne(expr, names, parentenv, handlers[[1L]])
>> 12: tryCatchList(expr, classes, parentenv, handlers)
>> 13: tryCatch(expr, error = function(e) { call <- conditionCall(e) if
>> (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch)))
>> call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix
>> <- paste("Error in", dcall, ": ") LONG <- 75L msg <-
>> conditionMessage(e) sm <- strsplit(msg, "\n")[[1L]] w <- 14L +
>> nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w))
>> w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L],
>> type = "b") if (w > LONG) prefix <- paste0(prefix, "\n
>> ") } else prefix <- "Error : " msg <- paste0(prefix,
>> conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if
>> (!silent && identical(getOption("show.error.messages"), TRUE)) {
>> cat(msg, file = stderr()) .Internal(printDeferredWarnings()) }
>> invisible(structure(msg, class = "try-error", condition = e))})
>> 14: try(gsub("\\s+", " ", paste(capture.output(print(args(setwd))),
>> collapse = "")), silent = TRUE)
>>
>> Possible actions:
>> 1: abort (with core dump, if enabled)
>> 2: normal R exit
>> 3: exit R without saving workspace
>> 4: exit R saving workspace
>>
>> >
>> Selection:
>> _______________________________________________
>> igraph-help mailing list
>> [email protected]
>> https://lists.nongnu.org/mailman/listinfo/igraph-help
>>
>>
>>
>> --
>> Gabor Csardi <[email protected]> MTA KFKI RMKI
>>
>> _______________________________________________
>> igraph-help mailing list
>> [email protected]
>> https://lists.nongnu.org/mailman/listinfo/igraph-help
>
>
> _______________________________________________
> igraph-help mailing list
> [email protected]
> https://lists.nongnu.org/mailman/listinfo/igraph-help
>
>
>
>
> --
> Gabor Csardi <[email protected]> MTA KFKI RMKI
>
> _______________________________________________
> igraph-help mailing list
> [email protected]
> https://lists.nongnu.org/mailman/listinfo/igraph-help
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