Honestly, I have no idea what this is and just vague idea about rpath, but two things you could try quickly are 1) installing the released version of igraph, the same way, to see what happens, and 2) installing the XML package the same way, because that uses libxml2 as well. Just to try to see where exactly the problem is.
Gabor On Sat, Apr 6, 2013 at 5:07 PM, Bob Pap <[email protected]> wrote: > Hi Gábor, > > I do not seem to have a problem with libxml (the compilation before worked > fine with only 64 bit, and the error is the same not using the > --no-multiarch flag). I rather think form the message that igraph cannot > find the location of libxml > > ls -l /usr/lib/libxml* > -rwxr-xr-x 1 root wheel 2390032 3 Oct 2012 /usr/lib/libxml2.2.dylib > lrwxr-xr-x 1 root wheel 15 3 Oct 2012 /usr/lib/libxml2.dylib -> > libxml2.2.dylib > > I recall that there were some issues reported in R help with some > libraries getting installed (referenced?) in the wrong places in version > 3.0.0. I think this is the case:@rpath/libxml2.2.dylib does not seem to > be found (what is @rpath?) > > Sorry to bother you, but my knowledge of compilation is VERY limited and > use version 0.7 since some of the functionality is not available in the > official release. > > KInd regards, > Bob > > > On 6 April 2013 16:12, Gábor Csárdi <[email protected]> wrote: > >> Hi Bob, >> >> R CMD INSTALL igraph_nightly_0.6.5-3106-20130304.tar.gz >> >> works fine for me on OS X 10.6.8. From R 3.0 R itself and all packages >> are 64 bit only, so you don't need the --no-multiarch flag. But you do need >> some 64 bit system libraries, like libxml2.2. >> >> So I guess that the problem is that libxml2.2 is 32-bit only on your >> system. >> >> G. >> >> >> On Sat, Apr 6, 2013 at 8:32 AM, Bob Pap <[email protected]> wrote: >> >>> Dear Tamás, >>> >>> Build fails in the new R (3.0.0). Any suggestions? >>> >>> command: >>> >>> R CMD INSTALL --no-multiarch >>> ~/Downloads/igraph_nightly_0.7-3137-20130302.tar.gz >>> >>> compilation works, but test fails >>> >>> installing to >>> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/igraph/libs >>> ** R >>> ** demo >>> ** inst >>> ** preparing package for lazy loading >>> ** help >>> *** installing help indices >>> ** building package indices >>> ** testing if installed package can be loaded >>> Error : .onLoad failed in loadNamespace() for 'igraph', details: >>> call: dyn.load(file, DLLpath = DLLpath, ...) >>> error: unable to load shared object >>> '/Library/Frameworks/R.framework/Versions/3.0/Resources/library/igraph/libs/igraph.so': >>> >>> dlopen(/Library/Frameworks/R.framework/Versions/3.0/Resources/library/igraph/libs/igraph.so, >>> 10): Library not loaded: @rpath/libxml2.2.dylib >>> Referenced from: >>> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/igraph/libs/igraph.so >>> Reason: image not found >>> Error: loading failed >>> Execution halted >>> ERROR: loading failed >>> * removing >>> ‘/Library/Frameworks/R.framework/Versions/3.0/Resources/library/igraph’ >>> * restoring previous >>> ‘/Library/Frameworks/R.framework/Versions/3.0/Resources/library/igraph’ >>> >>> >>> -- >>> Kindly, >>> Bob Pap >>> >>> _______________________________________________ >>> igraph-help mailing list >>> [email protected] >>> https://lists.nongnu.org/mailman/listinfo/igraph-help >>> >>> >> >> >> -- >> Gabor Csardi <[email protected]> MTA KFKI RMKI >> >> _______________________________________________ >> igraph-help mailing list >> [email protected] >> https://lists.nongnu.org/mailman/listinfo/igraph-help >> >> > > > -- > Kindly, > Bob Pap > > _______________________________________________ > igraph-help mailing list > [email protected] > https://lists.nongnu.org/mailman/listinfo/igraph-help > > -- Gabor Csardi <[email protected]> MTA KFKI RMKI
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