Hello Kent, On Ubuntu you can use the igraph ppa, to install the 0.6.5 version without having to compile it by yourself:
https://launchpad.net/~igraph/+archive/ppa sudo add-apt-repository ppa:igraph/ppa sudo apt-get update sudo apt-get install igraph python-igraph Gio On Tue, Feb 11, 2014 at 9:14 AM, Kent Mein <[email protected]> wrote: > Hi I'm trying to install igraph-0.6.5 on an ubuntu 12.04 64bit box. > > ./configure works just fine, but durring the final link stage I'm > getting the following error. Any tips on how to fix this? > > Thanks, > > Kent Mein > > [3:06] mein@jessica % make > make all-recursive > make[1]: Entering directory `/home/staff01/mein/Downloads/igraph-0.6.5' > Making all in src > make[2]: Entering directory `/home/staff01/mein/Downloads/igraph-0.6.5/src' > make all-am > make[3]: Entering directory `/home/staff01/mein/Downloads/igraph-0.6.5/src' > /bin/bash ../libtool --tag=CXX --mode=link g++ -I../include -I../include > -Wall -I../optional/glpk -g -O2 -no-undefined -lgmp -o libigraph.la-rpath > /soft/python-2.7/ubuntuamd1/lib libigraph_la-basic_query.lo > libigraph_la-games.lo libigraph_la-cocitation.lo libigraph_la-iterators.lo > libigraph_la-structural_properties.lo libigraph_la-components.lo > libigraph_la-layout.lo libigraph_la-structure_generators.lo > libigraph_la-conversion.lo libigraph_la-type_indexededgelist.lo > libigraph_la-spanning_trees.lo libigraph_la-igraph_error.lo > libigraph_la-interrupt.lo libigraph_la-other.lo libigraph_la-foreign.lo > libigraph_la-random.lo libigraph_la-attributes.lo > libigraph_la-foreign-ncol-parser.lo libigraph_la-foreign-ncol-lexer.lo > libigraph_la-foreign-lgl-parser.lo libigraph_la-foreign-lgl-lexer.lo > libigraph_la-foreign-pajek-parser.lo libigraph_la-foreign-pajek-lexer.lo > libigraph_la-foreign-gml-parser.lo libigraph_la-foreign-gml-lexer.lo > libigraph_la-dqueue.lo libigraph_la-heap.lo libigraph_la-igraph_heap.lo > libigraph_la-igraph_stack.lo libigraph_la-igraph_strvector.lo > libigraph_la-igraph_trie.lo libigraph_la-matrix.lo libigraph_la-vector.lo > libigraph_la-vector_ptr.lo libigraph_la-memory.lo libigraph_la-adjlist.lo > libigraph_la-visitors.lo libigraph_la-igraph_grid.lo libigraph_la-atlas.lo > libigraph_la-topology.lo libigraph_la-motifs.lo libigraph_la-progress.lo > libigraph_la-operators.lo libigraph_la-igraph_psumtree.lo > libigraph_la-array.lo libigraph_la-igraph_hashtable.lo > libigraph_la-foreign-graphml.lo libigraph_la-flow.lo > libigraph_la-igraph_buckets.lo libigraph_la-NetDataTypes.lo > libigraph_la-NetRoutines.lo libigraph_la-clustertool.lo > libigraph_la-pottsmodel_2.lo libigraph_la-spectral_properties.lo > libigraph_la-cores.lo libigraph_la-igraph_set.lo libigraph_la-cliques.lo > libigraph_la-revolver_cit.lo libigraph_la-revolver_grow.lo > libigraph_la-walktrap.lo libigraph_la-walktrap_heap.lo > libigraph_la-walktrap_graph.lo libigraph_la-walktrap_communities.lo > libigraph_la-infomap.lo libigraph_la-infomap_Greedy.lo > libigraph_la-infomap_Node.lo libigraph_la-infomap_FlowGraph.lo > libigraph_la-spmatrix.lo libigraph_la-community.lo > libigraph_la-fast_community.lo libigraph_la-evolver_cit.lo > libigraph_la-gml_tree.lo libigraph_la-bliss_orbit.lo > libigraph_la-bliss_eqrefhash.lo libigraph_la-bliss_partition.lo > libigraph_la-bliss_graph.lo libigraph_la-bliss_timer.lo > libigraph_la-bliss_heap.lo libigraph_la-bliss_utils.lo > libigraph_la-bliss.lo libigraph_la-cattributes.lo > libigraph_la-revolver_ml_cit.lo libigraph_la-zeroin.lo libigraph_la-bfgs.lo > libigraph_la-math.lo libigraph_la-forestfire.lo > libigraph_la-microscopic_update.lo libigraph_la-blas.lo > libigraph_la-arpack.lo libigraph_la-centrality.lo > libigraph_la-drl_layout.lo libigraph_la-drl_parse.lo > libigraph_la-drl_graph.lo libigraph_la-DensityGrid.lo > libigraph_la-gengraph_box_list.lo libigraph_la-gengraph_degree_sequence.lo > libigraph_la-gengraph_graph_molloy_hash.lo > libigraph_la-gengraph_graph_molloy_optimized.lo > libigraph_la-gengraph_mr-connected.lo libigraph_la-gengraph_powerlaw.lo > libigraph_la-gengraph_random.lo libigraph_la-decomposition.lo > libigraph_la-bipartite.lo libigraph_la-drl_layout_3d.lo > libigraph_la-drl_graph_3d.lo libigraph_la-DensityGrid_3d.lo > libigraph_la-foreign-dl-parser.lo libigraph_la-foreign-dl-lexer.lo > libigraph_la-cs_add.lo libigraph_la-cs_happly.lo libigraph_la-cs_pvec.lo > libigraph_la-cs_amd.lo libigraph_la-cs_house.lo libigraph_la-cs_qr.lo > libigraph_la-cs_chol.lo libigraph_la-cs_ipvec.lo libigraph_la-cs_qrsol.lo > libigraph_la-cs_cholsol.lo libigraph_la-cs_leaf.lo > libigraph_la-cs_randperm.lo libigraph_la-cs_compress.lo > libigraph_la-cs_load.lo libigraph_la-cs_reach.lo libigraph_la-cs_counts.lo > libigraph_la-cs_lsolve.lo libigraph_la-cs_scatter.lo > libigraph_la-cs_cumsum.lo libigraph_la-cs_ltsolve.lo libigraph_la-cs_scc.lo > libigraph_la-cs_dfs.lo libigraph_la-cs_lu.lo libigraph_la-cs_schol.lo > libigraph_la-cs_dmperm.lo libigraph_la-cs_lusol.lo > libigraph_la-cs_spsolve.lo libigraph_la-cs_droptol.lo > libigraph_la-cs_malloc.lo libigraph_la-cs_sqr.lo > libigraph_la-cs_dropzeros.lo libigraph_la-cs_maxtrans.lo > libigraph_la-cs_symperm.lo libigraph_la-cs_dupl.lo > libigraph_la-cs_multiply.lo libigraph_la-cs_tdfs.lo > libigraph_la-cs_entry.lo libigraph_la-cs_norm.lo > libigraph_la-cs_transpose.lo libigraph_la-cs_ereach.lo > libigraph_la-cs_permute.lo libigraph_la-cs_updown.lo > libigraph_la-cs_etree.lo libigraph_la-cs_pinv.lo libigraph_la-cs_usolve.lo > libigraph_la-cs_fkeep.lo libigraph_la-cs_post.lo libigraph_la-cs_util.lo > libigraph_la-cs_gaxpy.lo libigraph_la-cs_print.lo > libigraph_la-cs_utsolve.lo libigraph_la-sparsemat.lo libigraph_la-mixing.lo > libigraph_la-bigint.lo libigraph_la-bignum.lo libigraph_la-version.lo > libigraph_la-optimal_modularity.lo libigraph_la-igraph_fixed_vectorlist.lo > libigraph_la-separators.lo libigraph_la-igraph_marked_queue.lo > libigraph_la-igraph_estack.lo libigraph_la-st-cuts.lo > libigraph_la-cohesive_blocks.lo libigraph_la-statusbar.lo > libigraph_la-lapack.lo libigraph_la-complex.lo libigraph_la-eigen.lo > libigraph_la-feedback_arc_set.lo libigraph_la-sugiyama.lo > libigraph_la-glpk_support.lo libigraph_la-igraph_hrg_types.lo > libigraph_la-igraph_hrg.lo libigraph_la-distances.lo > libigraph_la-fortran_intrinsics.lo libigraph_la-matching.lo > libigraph_la-scg.lo libigraph_la-scg_approximate_methods.lo > libigraph_la-scg_exact_scg.lo libigraph_la-scg_kmeans.lo > libigraph_la-scg_utils.lo libigraph_la-scg_optimal_method.lo > libigraph_la-qsort.lo libigraph_la-qsort_r.lo libigraph_la-types.lo > libigraph_la-hacks.lo -lm -L/soft/python-2.7/ubuntuamd1/lib -Wl,-rpath > -WL,/soft/python-2.7/ubuntuamd1/lib -lxml2 -lz -lm libf2c.la libblas.la > liblapack.la libdlamch.la libarpack.la libglpk.la libplfit.la > libtool: link: g++ -fPIC -DPIC -shared -nostdlib > /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o > /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbeginS.o > .libs/libigraph_la-basic_query.o .libs/libigraph_la-games.o > .libs/libigraph_la-cocitation.o .libs/libigraph_la-iterators.o > .libs/libigraph_la-structural_properties.o .libs/libigraph_la-components.o > .libs/libigraph_la-layout.o .libs/libigraph_la-structure_generators.o > .libs/libigraph_la-conversion.o .libs/libigraph_la-type_indexededgelist.o > .libs/libigraph_la-spanning_trees.o .libs/libigraph_la-igraph_error.o > .libs/libigraph_la-interrupt.o .libs/libigraph_la-other.o > .libs/libigraph_la-foreign.o .libs/libigraph_la-random.o > .libs/libigraph_la-attributes.o .libs/libigraph_la-foreign-ncol-parser.o > .libs/libigraph_la-foreign-ncol-lexer.o > .libs/libigraph_la-foreign-lgl-parser.o > .libs/libigraph_la-foreign-lgl-lexer.o > .libs/libigraph_la-foreign-pajek-parser.o > .libs/libigraph_la-foreign-pajek-lexer.o > .libs/libigraph_la-foreign-gml-parser.o > .libs/libigraph_la-foreign-gml-lexer.o .libs/libigraph_la-dqueue.o > .libs/libigraph_la-heap.o .libs/libigraph_la-igraph_heap.o > .libs/libigraph_la-igraph_stack.o .libs/libigraph_la-igraph_strvector.o > .libs/libigraph_la-igraph_trie.o .libs/libigraph_la-matrix.o > .libs/libigraph_la-vector.o .libs/libigraph_la-vector_ptr.o > .libs/libigraph_la-memory.o .libs/libigraph_la-adjlist.o > .libs/libigraph_la-visitors.o .libs/libigraph_la-igraph_grid.o > .libs/libigraph_la-atlas.o .libs/libigraph_la-topology.o > .libs/libigraph_la-motifs.o .libs/libigraph_la-progress.o > .libs/libigraph_la-operators.o .libs/libigraph_la-igraph_psumtree.o > .libs/libigraph_la-array.o .libs/libigraph_la-igraph_hashtable.o > .libs/libigraph_la-foreign-graphml.o .libs/libigraph_la-flow.o > .libs/libigraph_la-igraph_buckets.o .libs/libigraph_la-NetDataTypes.o > .libs/libigraph_la-NetRoutines.o .libs/libigraph_la-clustertool.o > .libs/libigraph_la-pottsmodel_2.o .libs/libigraph_la-spectral_properties.o > .libs/libigraph_la-cores.o .libs/libigraph_la-igraph_set.o > .libs/libigraph_la-cliques.o .libs/libigraph_la-revolver_cit.o > .libs/libigraph_la-revolver_grow.o .libs/libigraph_la-walktrap.o > .libs/libigraph_la-walktrap_heap.o .libs/libigraph_la-walktrap_graph.o > .libs/libigraph_la-walktrap_communities.o .libs/libigraph_la-infomap.o > .libs/libigraph_la-infomap_Greedy.o .libs/libigraph_la-infomap_Node.o > .libs/libigraph_la-infomap_FlowGraph.o .libs/libigraph_la-spmatrix.o > .libs/libigraph_la-community.o .libs/libigraph_la-fast_community.o > .libs/libigraph_la-evolver_cit.o .libs/libigraph_la-gml_tree.o > .libs/libigraph_la-bliss_orbit.o .libs/libigraph_la-bliss_eqrefhash.o > .libs/libigraph_la-bliss_partition.o .libs/libigraph_la-bliss_graph.o > .libs/libigraph_la-bliss_timer.o .libs/libigraph_la-bliss_heap.o > .libs/libigraph_la-bliss_utils.o .libs/libigraph_la-bliss.o > .libs/libigraph_la-cattributes.o .libs/libigraph_la-revolver_ml_cit.o > .libs/libigraph_la-zeroin.o .libs/libigraph_la-bfgs.o > .libs/libigraph_la-math.o .libs/libigraph_la-forestfire.o > .libs/libigraph_la-microscopic_update.o .libs/libigraph_la-blas.o > .libs/libigraph_la-arpack.o .libs/libigraph_la-centrality.o > .libs/libigraph_la-drl_layout.o .libs/libigraph_la-drl_parse.o > .libs/libigraph_la-drl_graph.o .libs/libigraph_la-DensityGrid.o > .libs/libigraph_la-gengraph_box_list.o > .libs/libigraph_la-gengraph_degree_sequence.o > .libs/libigraph_la-gengraph_graph_molloy_hash.o > .libs/libigraph_la-gengraph_graph_molloy_optimized.o > .libs/libigraph_la-gengraph_mr-connected.o > .libs/libigraph_la-gengraph_powerlaw.o .libs/libigraph_la-gengraph_random.o > .libs/libigraph_la-decomposition.o .libs/libigraph_la-bipartite.o > .libs/libigraph_la-drl_layout_3d.o .libs/libigraph_la-drl_graph_3d.o > .libs/libigraph_la-DensityGrid_3d.o .libs/libigraph_la-foreign-dl-parser.o > .libs/libigraph_la-foreign-dl-lexer.o .libs/libigraph_la-cs_add.o > .libs/libigraph_la-cs_happly.o .libs/libigraph_la-cs_pvec.o > .libs/libigraph_la-cs_amd.o .libs/libigraph_la-cs_house.o > .libs/libigraph_la-cs_qr.o .libs/libigraph_la-cs_chol.o > .libs/libigraph_la-cs_ipvec.o .libs/libigraph_la-cs_qrsol.o > .libs/libigraph_la-cs_cholsol.o .libs/libigraph_la-cs_leaf.o > .libs/libigraph_la-cs_randperm.o .libs/libigraph_la-cs_compress.o > .libs/libigraph_la-cs_load.o .libs/libigraph_la-cs_reach.o > .libs/libigraph_la-cs_counts.o .libs/libigraph_la-cs_lsolve.o > .libs/libigraph_la-cs_scatter.o .libs/libigraph_la-cs_cumsum.o > .libs/libigraph_la-cs_ltsolve.o .libs/libigraph_la-cs_scc.o > .libs/libigraph_la-cs_dfs.o .libs/libigraph_la-cs_lu.o > .libs/libigraph_la-cs_schol.o .libs/libigraph_la-cs_dmperm.o > .libs/libigraph_la-cs_lusol.o .libs/libigraph_la-cs_spsolve.o > .libs/libigraph_la-cs_droptol.o .libs/libigraph_la-cs_malloc.o > .libs/libigraph_la-cs_sqr.o .libs/libigraph_la-cs_dropzeros.o > .libs/libigraph_la-cs_maxtrans.o .libs/libigraph_la-cs_symperm.o > .libs/libigraph_la-cs_dupl.o .libs/libigraph_la-cs_multiply.o > .libs/libigraph_la-cs_tdfs.o .libs/libigraph_la-cs_entry.o > .libs/libigraph_la-cs_norm.o .libs/libigraph_la-cs_transpose.o > .libs/libigraph_la-cs_ereach.o .libs/libigraph_la-cs_permute.o > .libs/libigraph_la-cs_updown.o .libs/libigraph_la-cs_etree.o > .libs/libigraph_la-cs_pinv.o .libs/libigraph_la-cs_usolve.o > .libs/libigraph_la-cs_fkeep.o .libs/libigraph_la-cs_post.o > .libs/libigraph_la-cs_util.o .libs/libigraph_la-cs_gaxpy.o > .libs/libigraph_la-cs_print.o .libs/libigraph_la-cs_utsolve.o > .libs/libigraph_la-sparsemat.o .libs/libigraph_la-mixing.o > .libs/libigraph_la-bigint.o .libs/libigraph_la-bignum.o > .libs/libigraph_la-version.o .libs/libigraph_la-optimal_modularity.o > .libs/libigraph_la-igraph_fixed_vectorlist.o > .libs/libigraph_la-separators.o .libs/libigraph_la-igraph_marked_queue.o > .libs/libigraph_la-igraph_estack.o .libs/libigraph_la-st-cuts.o > .libs/libigraph_la-cohesive_blocks.o .libs/libigraph_la-statusbar.o > .libs/libigraph_la-lapack.o .libs/libigraph_la-complex.o > .libs/libigraph_la-eigen.o .libs/libigraph_la-feedback_arc_set.o > .libs/libigraph_la-sugiyama.o .libs/libigraph_la-glpk_support.o > .libs/libigraph_la-igraph_hrg_types.o .libs/libigraph_la-igraph_hrg.o > .libs/libigraph_la-distances.o .libs/libigraph_la-fortran_intrinsics.o > .libs/libigraph_la-matching.o .libs/libigraph_la-scg.o > .libs/libigraph_la-scg_approximate_methods.o > .libs/libigraph_la-scg_exact_scg.o .libs/libigraph_la-scg_kmeans.o > .libs/libigraph_la-scg_utils.o .libs/libigraph_la-scg_optimal_method.o > .libs/libigraph_la-qsort.o .libs/libigraph_la-qsort_r.o > .libs/libigraph_la-types.o .libs/libigraph_la-hacks.o -Wl,--whole-archive > ./.libs/libf2c.a ./.libs/libblas.a ./.libs/liblapack.a ./.libs/libdlamch.a > ./.libs/libarpack.a ./.libs/libglpk.a ./.libs/libplfit.a > -Wl,--no-whole-archive -Wl,-rpath -Wl,/soft/python-2.7/ubuntuamd1/lib > -Wl,-rpath -Wl,/soft/python-2.7/ubuntuamd1/lib > -L/soft/python-2.7/ubuntuamd1/lib > /soft/python-2.7/ubuntuamd1/lib/libxml2.so -lz -lgmp > -L/usr/lib/gcc/x86_64-linux-gnu/4.6 > -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu > -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu > -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib > -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. -lstdc++ -lm -lc -lgcc_s > /usr/lib/gcc/x86_64-linux-gnu/4.6/crtendS.o > /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o -O2 > -Wl,-rpath -Wl,-soname -Wl,libigraph.so.0 -o .libs/libigraph.so.0.0.0 > /usr/bin/ld: cannot find libigraph.so.0: No such file or directory > collect2: ld returned 1 exit status > make[3]: *** [libigraph.la] Error 1 > make[3]: Leaving directory `/home/staff01/mein/Downloads/igraph-0.6.5/src' > make[2]: *** [all] Error 2 > make[2]: Leaving directory `/home/staff01/mein/Downloads/igraph-0.6.5/src' > make[1]: *** [all-recursive] Error 1 > make[1]: Leaving directory `/home/staff01/mein/Downloads/igraph-0.6.5' > make: *** [all] Error 2 > > > -- > [email protected] > http://www.cs.umn.edu/~mein > > _______________________________________________ > igraph-help mailing list > [email protected] > https://lists.nongnu.org/mailman/listinfo/igraph-help > -- Giovanni Marco Dall'Olio, PhD IBE, Institut de Biologia Evolutiva, CEXS-UPF (Barcelona, Spain) My blog on bioinformatics: http://bioinfoblog.it
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