Hello!! I need python igraph to run trans ABySS. I am installing it on a cluster where I dont have root access. I tried to do as follows
python setup.py install --user But I got this error /usr/bin/ld: /usr/lib64/libxml2.a(entities.o): relocation R_X86_64_32 against `.text' can not be used when making a shared object; recompile with -fPIC /usr/lib64/libxml2.a: could not read symbols: Bad value collect2: error: ld returned 1 exit status error: command 'gcc' failed with exit status 1 I know from here https://lists.nongnu.org/archive/html/igraph-help/2014-05/msg00045.html that the static version of libxml2 on my system was not compiled with the -fPIC option enabled, so it cannot be linked to a dynamic library. The problem is I cannot do what they suggest because I do not have root privileges. I tried to compile libxml2 with -fPIC option eneabled on my home directory and add it to my PATH but I get the same error. I dont know haw to make it use the libxml2 installed in my home directory. Is it possible? Is there any other way? Thank you for your time Cheers J. Manuel
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