Good morning,
I need to prune vertices in a graph based on a certain criteria (not in a
given list). When doing so, this leaves isolated vertices, which I also
like to remove. But when doing do, delete_vertices() does not remove all
vertices with degree == 0. I am not sure why this is happening.
I am attaching the script and the data that I am using so you can see the
issue.
Thanks very much,
-Ahmed
source,target
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#ulcers,#biancofiore
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#client,#biopharma
#healthcare,#biopharma
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nexium,#birthcontrol
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#lagos,#birthdayweekend
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#teamsober,#bitcheslovev3
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hemp,#bitcoin
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#blackfridayproblems,#bitcoins
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#mykindofholiday,#bitcoins
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#business,#biz
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#brooklynnets,#bknets
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#living,#black
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#exhausted,#blackfriday
#pennystocks,#blackfriday
#pretentious,#blackfriday
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benadryl,#blackfriday
hemp,#blackfriday
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marijuana,#blackfriday
zantac,#blackfriday
aspirin,#blackfriday?
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ibuprofen,#blackfridaybullshit
hemp,#blackfridayca
#blackfridayboricua,#blackfridayconshali
marihuana,#blackfridayconshali
allegra,#blackfridaydeals
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hemp,#bodyshop
aspirin,#boehringeringelh?
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advil,#boilermaker
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marijuana,#boldomatic
#420,#bombaclat
#braaap,#bombaclat
marijuana,#bombaclat
#shibari,#bondage
hemp,#bondage
hemp,#bongwreckers
marihuana,#bonomiresponde
#amazon,#book
marijuana,#book
claritin,#boom
tums,#boom
#onnitcybermonday,#boom!
hemp,#boom!
hemp,#boom?
advil,#bootandrally
hemp,#bootybounce
#drugs,#border
marijuana,#border
#sandiego,#borderpatrol
marijuana,#borderpatrol
#help,#bored
axid,#bored
#disgusting,#boredeating
hemp,#boredeating
aspirin,#boreoff
aspirin,#borg
#arellano-felix,#bos
#assassination,#bos
#krf,#bos
#nsa,#bos
#prism,#bos
marijuana,#bos
hemp,#boss
marijuana,#boss
#drugs,#boston
#legalize,#boston
#!/usr/local/bin/python
import csv
import igraph
from igraph import *
from itertools import chain
def is_hashtag(vertex):
return vertex["name"].startswith("#")
reader = csv.DictReader(open("sample-of-all.csv"), dialect="excel")#mjd.ALL.2162014.csv network-sample-problematic.csv#kh-all-graph-validated.csv
g = igraph.Graph.DictList(vertices=None, edges=reader)
#del g.es()[None]
g.to_undirected()
g.simplify()
hashtags = []
with open('good-hashtags.csv') as f:
hashtags = f.read().splitlines()
for v in g.vs:
if (str(v["name"]) not in hashtags) :
#print v["name"] + str(v.degree())
g.delete_vertices(v)
for v in g.vs:
if v.degree() == 0:
g.delete_vertices(v)
layout = g.layout_random()
visual_style = {}
visual_style["layout"] = layout
visual_style["vertex_color"] = ["red" if is_hashtag(vertex) else "blue" for vertex in g.vs]
visual_style["vertex_size"] = [5 if is_hashtag(vertex) else 23 for vertex in g.vs]
visual_style["vertex_label"] = ["" if is_hashtag(vertex) else vertex["name"] for vertex in g.vs]
visual_style["vertex_label_size"] = 23
visual_style["edge_width"] = .15
visual_style["edge_length"] = 7
visual_style["edge_color"] =["pink"]
visual_style["vertex_label_dist"] = 2
visual_style["bbox"] = (1000, 1000)
visual_style["margin"] = 50
plot(g, "/Users/ahamed/Publications/JBI-SI-GoodTemplate/ddi-network-vis-kh-pruned-rand.pdf",**visual_style) #ddi-network-vis-kh-labeled.pdf
plot(g, **visual_style) #diflucan
#hangover
#darwinawards
#ugh
#media
#killmenow
#europe
#bcpoli
#clothing
#maryjane
#ugg
#fuck
#tgif
#louisville
#amazon
#peace
#grouptherapy
#stonernation
#music
#nasalallergy
#goaway
#happydanksgiving
#womp
#freesamples
#smokegood
#bitcoin
#co
#pronto
#us
#occupy
#ulcers
#canadian
#obama
#illuminati
#stressed
#calilove
#accessory
#usa
#nj
#anti-inflammatories
#stocks
#sick
#cramps
#toronto
#freebies
#good
#sike
#jobs
#yelp
#lady
#legal
#copd
#celebrex
#armani
#fuckallergies
#radio
#comedy
#grow
#tlot
#clothes
#ow
#menitonsomeoneyourethankfulfor
#boom
#florida
#savings
#remember
#law
#recipe
#ebay
#closure
#firstworldproblems
#sadtweet
#ew
#ows
#forreal
#discount
#mjnews
#hippie
#gifts
#allergies
#adidas
#lastfm
#reggae
#canada
#ad
#hash
#pdx
#sleepy
#thanksgivinglive
#childhoodmemories
#cybermonday
#etsymnt
#teaparty
#migraine
#tcot
#herbs
#lovinglife
#gohawks
#turkeyday
#egypt
#ganja
#p2
#ford
#leopard
#hair
#hungover
#jayz
#yoga
#shopping
#family
#sotired
#vegetarian
#aids
#hiphop
#full
#deathsquad
#justgirlythings
#lies
#trendy
#fabric
#logic
#soundcloud?
#themoreyouknow
#pharma
#amen
#rulez
#turkeybowl
#no
#yolo
#awesome
#clinical
#imthankful
#justkidding
#topoli
#uhoh
#painful
#rheumatology
#la
#gc
#jewelry
#reddit
#strap
#gobblegobble
#smh
#knowyouranon
#mylife
#trivia
#tired
#medicinal
#breaking
#endthewarondrugs
#constantcontact
#headache
#randomtweet
#nottingham
#latestnews
#eczema
#etsy
#chill
#print
#wow
#wellbeing
#light
#epic
#literally
#nojoke
#heartburn
#drugaddict
#stupid
#legalize
#f13geo35
#timetolegalize
#ajamstream
#atheist
#buckeyes
#ebook
#homesweethome
#houston
#moremota
#novicongress
#situfamiliatesiguieraentwitter
#sorrynotsorry
#tech
#withoutadoubt
#soundcloud
#coupons
#celebs
#classaction
#dmad13
#cpc
#heal
#rip
#chrisbrown
#robford
#fuckyou
#party
#noticias
#whatilearnedtoday
#healthcare
#medicalmarijuana
#current
#natural
#bible
#christmas
#psoriasis
#best
#gold
#giveaway
#data
#facepalm
#didyouknow
#hmmm
#hobbylobbyrules
#mesa
#philadelphia
#indeed
#toofunny
#arthritis
#gross
#fml
#life
#texas
#marijuana?
#toohightofail
#video
#job
#phoenix
#green
#medical
#shouldbelegal
#rcmp
#dontjudge
#fail
#hmm
#makeup
#winning
#mentalhealth
#8d
#whatimthankfulfor
#bubblews
#startups
#science
#livetweet
#whoops
#iseeyou
#lt
#mentionsomebodyyourethankfulfor
#perfection
#yum
#black
#tfb
#lmao
#grocery
#nike
#cheese
#anti-histamine
#uruguay
#marihuana
#mmot
#thanks
#highlife
#handmade
#thanksgivukkah
#motivation
#macys
#eh
#raw
#goals
#idk
#dead
#zombie
#dmv
#bitcoins
#4
#doit
#whateven
#jesus
#preach
#lol
#sleep
#silver
#prednisone
#pharmacy
#pets
#ff
#travel
#peopleschoice
#classy
#excited
#oomf
#everyday
#scary
#scared
#funfact
#wallet
#food
#cancer
#not
#what
#lymedisease
#nigeria
#familyfeud
#heart
#love
#fact
#drug
#allegra
#facts
#idiot
#imthankfulfor
#2
#oops
#change
#clutch
#success
#laws
#faded
#high
#pot
#googlenews
#cdnpoli
#fun
#obamacare
#done
#diy
#mentionsomeoneyourethankfulfor
#please
#energy
#iamthankfulfor
#coupon
#ohwell
#wtf
#np
#nowplaying
#coffee
#thestruggle
#pain
#turnup
#blessed
#fashion
#justsaying
#rt
#legalizeit
#help
#flower
#weed
#drugs
#mmj
#dying
#fitness
#goodnight
#thankfulfor
#teamfollowback
#why
#women
#mentionsomeoneyouarethankfulfor
#420
#free
#news
#blackfriday
#health
#mtvstars
#thankful
#hemp
#cannabis
#happythanksgiving
#marijuana
#thanksgiving
#fb
#k
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