> I have been using Ubuntu (debian) system all through the Linux life.
> Recently I got into a situation where I am required to package a software
> for a RPM system (CentOS). There are rpm build tools available in the
> Ubuntu repos, but I my reading through the forums suggest that its always
> better to build rpms in a rpm based system.
>

This is the right approach.

> Considering we will be specifying the dependencies in the
> packaging configuration file and we will be packaging compiled
> binaries, How far does it hold good?.
>

Dependencies you specify solve only part of the packaging problem. You 
*might* face issues in resolving other shared library dependencies that 
your binary uses or it just so happens at times that the configuration 
files you depend on lie in a different location. Also, Since CentOS/RHEL 
is targeted at better stability, they might be behind in many areas. 
Also, not to mention the human error, it is better if you test/install 
the package yourself on CentOS before giving it to someone else.

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