On Jan 2, 2014, at 1:21 PM, Safaa Al-Haj Saleh wrote: > Hi all, > > I have installed "ij_clustering.jar" that contains KMeansClustering plugin. I > am trying to call this plugin from java code as the following: > > IJ.runPlugIn(imp,"KMeansClustering",""); > > or using > > IJ.run(imp,"k-means Clustering","number=2 cluster=0.00010000 enable > randomization=176"); > to run the installed plugin from imageJ menus. > > The problem is that the resulted image is not clustered at all (i.e. it > remains the same). I think the third parameter (arg) should be set in the > first command, but I have no idea how to set it. > > My point is that how to run installed imageJ plugins in my java code?
You can get the code needed to run the plugin by running the Plugins>Segmentation>KMeansClustering command with the recorder (Plugins>Macros>Record) running. This is what I get when I run the KMeansClustering command (using default settings) with the recorder running in JavaScript mode: imp = IJ.getImage(); IJ.run(imp, "k-means Clustering ...", "number_of_clusters=4 cluster_center_tolerance=0.00010000 enable_randomization_seed randomization_seed=48"); I get the same results by running this code as I do when running the menu command. Note that there should not be any line breaks in the second line of code. -wayne _______________________________________________ ImageJ-devel mailing list ImageJ-devel@imagej.net http://imagej.net/mailman/listinfo/imagej-devel
