Last thing : I would like to run this script in headless mode on pretty big images (17GB), so I would like to be sure wether `img = data.open(fname)` use SCIFIO to open them.
If it does I guess virtual stack is used in case the opened image is big. Am I correct ? -- Hadrien Mary Ph.D student in Biology Tournier-Gachet Team CNRS - LBCMCP - UMR 5088 Université de Toulouse - Bât. 4R3B1 118, route de Narbonne - 31062 Toulouse On Sat, Jan 24, 2015 at 9:25 PM, Hadrien Mary <hadrien.m...@gmail.com> wrote: > Hi, > > I am trying to write a small script to perform z projection on an > image. It seems that I use the wrong signature for ops.project() > function. I tried many combinations without success... > > ------------------------------- > # @DatasetService data > # @DisplayService display > # @OpService ops > > from net.imagej.ops.statistics import Max > from net.imglib2.type.numeric import RealType > > fname = "/home/hadim/test_small.ome.tif" > img = data.open(fname) > display.createDisplay(img.getName(), img) > > #op = ops.sum(RealType, img) > img2 = ops.project(img, Max, 1) > display.createDisplay(img2.getName(), img2) > > data.save(img2, "/home/hadim/projected.ome.tif") > ----------------------------------- > > I looked the doc, imagej-ops tests but I can't find the correct > signature for python. Maybe you can help. > > Thank you > > -- > Hadrien Mary > > Ph.D student in Biology > Tournier-Gachet Team > CNRS - LBCMCP - UMR 5088 > > Université de Toulouse - Bât. 4R3B1 > 118, route de Narbonne - 31062 Toulouse _______________________________________________ ImageJ-devel mailing list ImageJ-devel@imagej.net http://imagej.net/mailman/listinfo/imagej-devel
