Hi Mark, Hi Tom I seem to be having trouble getting the colocalization analysis plugins top build, this is in Eclipse mars.
I imported the maven project, and imageJ runs fine from eclipse, but i dont see any place where the coloc .jar is biult and saved? Where should the built .jar be located by default? what would a main class look like for running the coloc plugin straight from ellipse, without having to copy a .jar into another fiji ? maybe i am missing something at http://imagej.net/Developing_Fiji_in_Eclipse#Running_and_Debugging its not obvious for an elclipse noob like me. cheers D On 25 June 2015 at 19:39, Mark Hiner <hi...@wisc.edu> wrote: > Hi Daniel, > > >The Fiji.sc docs describe how to do a plugin in the script editor, > >or how to develop imageJ itself in eclipse, > >but not how to get one of the external Fiji plugins, like coloc analysis, > >and then run Fiji with my hacked plugin code running from eclipse???? > > This process is described in the Developing Fiji in Eclipse tutorial[1] - > which I just updated with a bit more information. > > >i can run imageJ from there by highlighting the ij jar and doing run as > java application > > If you are running ij.jar from the Maven dependencies of > Colocalisation_Analysis, then Eclipse is likely just literally executing > the jar without anything else on the classpath. Using Debug.run will give > you an ImageJ with your plugin loaded properly. > > Also, if you don't want to make a temporary main method, you can always > build the .jar for your plugin and put it into an existing Fiji > installation. > > Hope that helps. > > Best, > Mark > > [1] http://imagej.net/Developing_Fiji_in_Eclipse#Running_and_Debugging > > > On Thu, Jun 25, 2015 at 7:32 AM, Daniel White <d...@chalkie.org.uk> wrote: > >> Hi All, >> >> I'm setting up my plugin dev environment (win7 x64), by reading the docs >> on the fiji.sc pages. >> I got eclipse installed, new JDK installed and seen by eclipse, >> Colocalization_Analysis plugin cloned from github using github for windows >> I imported the plugin as described with the import maven project gadget >> in eclipse, >> and it got the dependencies as jars apparently. >> >> So i can run imageJ from there by highlighting the ij jar and doing run >> as java application, >> but the coloc_2 plugin doesnt appear in the Analyze menu?????? >> >> The Fiji.sc docs describe how to do a plugin in the script editor, >> or how to develop imageJ itself in eclipse, >> but not how to get one of the external Fiji plugins, like coloc analysis, >> and then run Fiji with my hacked plugin code running from eclipse???? >> >> Can I help fix the docs so noobs like me can get started easier, >> and in the process get myself up and running with a little help from on >> of you folks please? >> >> cheers >> >> Dan White >> >> _______________________________________________ >> ImageJ-devel mailing list >> ImageJ-devel@imagej.net >> http://imagej.net/mailman/listinfo/imagej-devel >> >> >
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