Dear Mark, thank you for your willingness to help me. No, we are not using the latest TrackMate master. I'm implementing the find-maxima detector for TrackMate and therefore I'm using a modified version [1] (this is the version which produces the exception) of the find-maxima branch of TrackMate [2] . To reproduce this error (sorry that I've forgotten this important information in my last mail!): - Start TrackMate with the Main Method in the TrackMatePlugIn_.java (I'm using eclipse and select "Run as -> Java Application") - Select "Next" in TrackMate - Select the "Find Maxima" detector - Select a arbitary threshold - Press Preview The static initializer did not help. Thank you for your help! Cheers, Thorsten [1] https://github.com/thorstenwagner/TrackMate/tree/master/src/main/ja va/fiji/plugin/trackmate/detection/findmaxima (These classes containing all changes that I've made) [2] https://github.com/fiji/TrackMate/tree/find-maxima Am Dienstag, den 14.07.2015, 09:45 -0500 schrieb Mark Hiner: > Hi Thorsten, > > >For some reasons we have to start TrackMate by the following main > method: > > How exactly are you trying to launch TrackMate? Are you using the > latest TrackMate master[1]? When I run this class in Eclipse, it > works for me - launching TrackMate and opening the sample image > (although I did have to change the path to > http://fiji.sc/samples/FakeTracks.tif) > > >This is the exception: > >http://pastebin.com/A3N5LQBw > > Note that this exception message includes suggested debugging and > workaround options. It may be sufficient to add the suggested static > initializer. > > >However, this just leads to another exception: > >http://pastebin.com/m0VCTZ4S > > My first guess would be a class path problem with the way you are > launching TrackMate. Also, it may be helpful to lean on the Fiji > Debug launcher[2] to set things up properly. If you can share the > exact command you used to launch (or your IDE environment) I can try > to reproduce and debug. > > Best, > Mark > > [1] https://github.com/fiji/TrackMate/commits/master > [2] > http://imagej.net/Developing_Fiji_in_Eclipse#Running_and_Debugging > > On Sat, Jul 11, 2015 at 4:17 AM, Thorsten Wagner < > wag...@biomedical-imaging.de> wrote: > > Just an additional information: > > > > I tried to start it by imagej2: > > > > net.imagej.Main.main(args); > > new TrackMatePlugIn_().run( "/home/thorsten/samples/FakeTracks.tif" > > ); > > > > However, this just leads to another exception: > > http://pastebin.com/m0VCTZ4S > > > > Cheers, > > Thorsten > > > > Am Samstag, den 11.07.2015, 11:14 +0200 schrieb Thorsten Wagner: > > > Dear List, dear Brian, > > > > > > we currently came across problems with ImageJ-OPs and TrackMate. > > > > > > For some reasons we have to start TrackMate by the following main > > > method: > > > https://github.com/thorstenwagner/TrackMate/blob/master/src/main/ > > java > > > /f > > > iji/plugin/trackmate/TrackMatePlugIn_.java#L134 > > > > > > However, this always leads to the a exception at this line: > > > https://github.com/thorstenwagner/TrackMate/blob/master/src/main/ > > java > > > /f > > > > > iji/plugin/trackmate/detection/findmaxima/FindMaximaSpotDetector.ja > > va > > > #L > > > 123 > > > > > > This is the exception: > > > http://pastebin.com/A3N5LQBw > > > > > > Any ideas? > > > > > > Cheers, > > > Thorsten > > > > _______________________________________________ > > ImageJ-devel mailing list > > ImageJ-devel@imagej.net > > http://imagej.net/mailman/listinfo/imagej-devel > >
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