Sometime ago one of the students asked me about using IVEware for simultaneously multiply impute missing disease status, covariates, genotypes and haplotypes. The goal is then to perform genetic or gene-covariate interaction analysis. I have prepared a short note on the potential use of IVEware for this purpose. This methodology is also applicable to MICE (those using R) and ICE(those using STATA). Obviously, this is just a conceptual exercise at this point. If you are working on a data set of this type, then you are welcome to try it out and I will be interested in receiving feedback.
You can download the short note from the 'unpublished papers" section on my website www-personal.umich.edu/~teraghu Raghu
