Does anyone know how to write dependencies for Java source files that I could
use to have the default target build the .jar?
I can't say i "know" how to do it the best way, but perhaps you can use a folder as a target? Say, "sources" is where java files are, and "classes" is the destination folder for them, then

classes/org/perl/inline/java: sources/*.java
 mkdir -p classes
 javac -d classes sources/*.java

should ensure that every time a java file is updated, the javac is invoked to compile a class file.

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