Hi Ale, Which patch are you referring to?
Thanks, Matt On Thu, Jan 10, 2013 at 7:56 AM, Alessandro <[email protected]> wrote: > Hi, > > I'm wondering if there is a reason to do not correct the know bug in GDCM > SeriesHelper. > > Thanks, > Ale > > Il giorno 26/dic/2012, alle ore 21.43, Matt McCormick ha scritto: > >> The Insight Software Consortium is happy to announce the release of ITK 4.3! >> >> The 4.3 release is a major milestone that marks the hard work of many >> outstanding community members. >> >> >> Links to the Sourceforge.net tarballs can be found on the download page: >> >> http://www.itk.org/ITK/resources/software.html >> >> >> InsightToolkit 4.3.1 tarballs were created after a bug in the >> PhilipsRecImageIO was discovered immediately after the 4.3.0 tag was >> pushed. >> >> >> We are excited to announce that experimental DICOM image reading is >> available via the DCMTK library as a backend in addition to the GDCM >> library. By default, DCMTK ImageIO support is not enabled. To try >> DCMTK ImageIO support, turn the CMake option Module_ITKIODCMTK ON. >> For Unix platforms, the supporting DCMTK library will automatically be >> built as a CMake ExternalProject. On Windows, the DCMTK library must >> be built independently of the ITK build system. Then, specify the >> location to the external build after setting the CMake option >> ITK_USE_SYSTEM_DCMTK ON. >> >> WrapITK has undergone extensive improvements and bug fixes. The status >> of WrapITK on various platforms can be found on the following Wiki >> page: >> >> http://www.itk.org/Wiki/ITK/WrapITK_Status >> >> A number of registration-related feature enhancements were added. The >> image registration methods have been updated to accommodate multiple >> image metrics within a single optimization scheme. This permits, for >> example, registration of a T1/T2 fixed image pair with a T1/T2 moving >> image pair using a single metric for both T1 and T2 gradients or even >> using two different metrics. New exponential transforms are available >> along with automated B-Spline transform scale estimation. A new >> physics-based non-rigid registration class is also available. >> >> Updated third-party library versions include: >> * NrrdIO from Teem 1.11, >> * libtiff 4.03, >> * FFTW 3.3.2 >> >> A large number of important bugs were crushed, including fixes to the >> ObjectFactoryBase, Patch-Based Denoising improvements, support for a >> system libtiff, mesh processing, and FFTW use. >> >> Support for itk::VectorImage’s was added to many algorithms, and a >> single templated Adaptor class can now be applied without modification >> to both itk::VectorImage’s and itk::Image’s of itk::Vector’s, >> itk::RGBPixel’s, etc. >> >> An extensive amount of code cruft was removed and coding style was >> made more consistent; ITK gets more stylish and classy with every >> release! >> >> Performance optimizations were achieved by removing GetInput/GetOutput >> calls within filter inner loops, improving memory alignment, memory >> access pattern optimizations, and parallelization through threading. >> >> NOTE: As previously scheduled, Visual Studio 2005 will no longer be >> supported after this release. >> >> Changes from v4.2.0 to v4.3.0: >> >> Andreas Schuh (1): >> DOC: Modify BSplineDeformableTransform comments. >> >> Andriy Kot (1): >> ENH: Main filter for A2D2 PBNRR. >> >> Arnaud Gelas (10): >> PERF: couple of performance improvements useful for mesh processing >> PERF: Minor performance improvement in KernelTransform >> BUG: Fix errors on MS Visual >> COMP: missing includes in itkVectorImageToImageMetricTraitsv4.h >> ENH: Add tests for iterator indices >> COMP: fix doxgen warnings >> COMP: fix warning about uninitialized value >> COMP: Fix compilation error (missing include). >> COMP: fix clang warning about unused parameter >> STYLE: Make CopyMeshToMesh a function just like the other Copy >> Container ones. >> >> Baohua Wu (2): >> BUG: fixed a few bugs related to GPU Demons >> ENH: added suport for buffered region in GPU image >> >> Bill Lorensen (11): >> COMP: Macro definition of None in X11 breaks enum >> BUG: ThirdParty should not depend on ITK >> ENH: Utility to find modules needed by an ITK app >> COMP: Incorrect test signature >> BUG: GDCMImageIO ignores ImagePositionPatient >> STYLE: Fix according to KWstyle >> BUG: DCMTKImageIOFactory has wrong class name >> COMP: Remove DCMTK from default modules >> COMP: add set methods for member variables where missing. >> BUG: Cannot read a 2 channel (gray, alpha) png file correctly >> COMP: Revert recent change to iterator that fails to compile >> >> Brad King (11): >> MetaIO: Avoid NULL dereference in MetaOutput::GetUsername >> KWSys: Fix SystemInformation declaration order >> ENH: Allow ITK modules to export custom information >> ENH: ExternalData: Fix typo in unknown action error message >> COMP: Make module header tests depend on module libraries >> COMP: Make module header tests depend on module libraries >> STYLE: Replace write_file() with file(WRITE) and file(APPEND) >> STYLE: Replace make_directory() with file(MAKE_DIRECTORY) >> STYLE: Replace install_(files|programs|targets) with install command >> STYLE: Replace remove() with list(REMOVE_ITEM) >> STYLE: Remove unsed vxl source directory >> >> Bradley Lowekamp (46): >> COMP: fixing error when instatiated with image of double >> PERF: remove per sample allocation, use per-thread structure >> BUG: prevent static initialization fiasco during factory registration >> PERF: Avoid memcpy call per component for Nift >> BUG: Correct for divide by zero when first bin has zero frequency >> PERF: add alignment data attribute to per-thread structure >> BUG: fix writing a corrupt meta image header from unknow metadata >> PERF: remove per sample allocation, use per-thread structure >> BUG: prevent static initialization fiasco during factory registration >> BUG: fix writing a corrupt meta image header from unknow metadata >> BUG: fix for overlay functor for llvm optimization bug >> ENH: adding support for VectorImage output in LabelMapCountorOverlay >> BUG: Fix segfault when no inital means were set. >> BUG: verify sigma is a positive number for Recursive Gaussian >> COMP: fix exception specification warning >> BUG: Restore automatic loading of factories in ITK_AUTOLOAD_PATH >> BUG: Avoid warning by using ProcessObject::GetInput method >> COMP: add missing functional header for logic ops tests >> BUG: The incorrect auto_load path was specified in itkIOPluginTest >> BUG: Use path to configure NrrdIO.h for installation >> PERF: Replacing iterator copy with optimized ImageAgotithm::Copy >> BUG: Prevent segfault when logger not set for PatchedBasedDenoising >> BUG: Update uncrustify configuration with space before access spec >> ENH: Enabling support for system lib versions prior to TIFF 4.0.0 >> STYLE: Fixed numerous style error in PatchBased denoising >> BUG: Internal factory must use RegisterFactoryInternal method >> BUG: Fix Wrapping FFTWComplexToComplex >> ENH: updating to libtif 4.0.3 >> BUG: Fix compilation ofswig external project >> BUG: Fix segfault from integer overflow in NIFTI reader >> BUG: disable wrapping of Toboggan filter for win 64 >> ENH: adding support for VectorImage to JoinSeries filter >> ENH: support for VectorImage output to GradientRecursiveGaussian >> BUG: Correcting wrapping CMakeList.txt for DCMTK >> ENH: Improve MRCImageIO support for VectorImages >> COMP: Adding Valgrind suppression for NRRD IO on RH6 >> ENH: Convert the Modulus filter to standard binary filter >> BUG: unset environmental default number of threads >> COMP: Adding valgrid suppression file for RHEL6 >> BUG: Remove NiftiBigIO Test add MEMORY_SIZE test lock >> COMP: Fix WrapITK warning in DCMTK >> BUG: Append FFTW dirs to ITK's in ITKConfig >> COMP: Fix link error with visibility-inlines-hidden >> BUG: ShrinkImageFilter marked as modified in SetShrinkFactor >> BUG: Prevent modulus by zero is Modulus functor >> BUG: Enable the rehash method to re-register internal factories. >> >> Brian Avants (2): >> COMP: The + operation was not registering on Win7-vc10-vce32rel >> BUG: InputImageDimension should be OutputImageDimension >> >> Brian Helba (1): >> ENH: Update Remote/LesionSizingToolkit to newer commit >> >> Cory Quammen (4): >> BUG: Added missing include >> BUG: Propagate the spacing and meta-data in FFTWForwardFFT fitler. >> BUG: Added locking around fftw_destroy_plan >> DOC: Modify PasteImageFilter comments. >> >> David Doria (6): >> ENH: Add a SetRegion function to all ImageIterators. >> ENH: Add SetRegion function to NeighborhoodIterators. >> ENH: Allow the ShapedNeighborhoodIterators to use SetRegion. >> COMP: Replace stdlib.h with cstdlib. >> STYLE: Replace dash character in comment. >> STYLE: Replace C Library headers with c[headername] >> >> Dirk Padfield (3): >> PERF: Faster distance computation and fixed reflective iterator bug >> BUG: Corrected bug in SignedDanielssonDistanceMap and added >> regression tests. >> ENH: Templated MaskedFFTNormalizedCorr. over MaskType (#ITK-2940) >> >> Fotis Drakopoulos (1): >> BUG: Variance and structure tensor fix >> >> Gang Song (2): >> ENH: Add sparse threader for ANTS CC metric >> COMP: Remove deque header from metric class header >> >> Gordon Kindlmann (5): >> ENH: updating ITK's NrrdIO to reflect state of Teem's NrrdIO, take 4 >> ENH: re-enabling warnings for NrrdIO >> ENH: warning about idxIn in reorder.c; no trailing whitespace >> ENH: still trying to quash warning about idxIn in reorder.c >> BUG: tracking changes (hopefully the last) in Teem prior to its >> 1.11 release >> >> Hans Johnson (35): >> ENH: Bump version to 4.3.0 >> BUG: Test harness gave false positives >> BUG: Remove duplicate file in wrong place >> ENH: Allow removal of all Deprecated code >> COMP: Remove unnecessary const_cast. >> STYLE: Remove all references to StartRegistation >> BUG: Array overrun in LaplacianRecursiveGaussian >> COMP: Revert use of itkLegacyMacro >> ENH: Improve testing of GetInverse >> PERF: Const correct optimize initialization. >> COMP: Fix data type for consistency >> ENH: Imaging data should not be in git >> BUG: Missing DisplacementFieldTransform IO >> COMP: Fix warning for propogating success status >> BUG: Make IsTransformQueueEmpty const >> STYLE: Convert CMake-language commands lower case >> STYLE: Remove CMake-language block-end arguments >> BUG: Reading composite transform error >> ENH: Update compiler fixes for fftw external >> BUG: Test harness gave false positives >> BUG: Remove duplicate file in wrong place >> COMP: Remove unnecessary const_cast. >> COMP: Unused variable warning with FFTW options >> ENH: Test always uncondintionally returned true >> STYLE: Add more files that need to be ignored >> STYLE: Fix typo in comment. >> PERF: Avoid costly redundant computations. >> BUG: Removed too stringent ConceptChecking >> PERF: Remove unnecessary function GetImageDimension >> STYLE: Remove dead code ITK_TEMPLATE_EXPLICIT >> STYLE: Made use of .hxx guards consistent >> DOC: Update space before access specification >> BUG: Allow backwards compatibilty for ITK_TEMPLATE_TXX >> STYLE: Make round consistent in ITK. >> BUG: Incorrect syntax for Intel optimize pragma >> >> Ho Cheung (4): >> COMP: Add "#include " to classes for VS2012 >> PERF: Fix usage of ElementAt in PolyLineParametricPath to use >> const version >> BUG: Make LaplRecurGauss filter set the number of threads on the >> subfilters >> COMP: Fix regression of name mangling for libtiff >> >> ITK Migration V4 (3): >> DOC: Modify ComposeImageFilter comments. >> DOC: Modify VectorIndexSelectionCastImageFilter comments. >> DOC: Modify AnisotropicDiffusionFunction comments. >> >> Jean-Christophe Fillion-Robin (2): >> BUG: Prevent MetaIO vessel tube from getting stuck in while loop >> BUG: Add test for MetaIO vessel tube from getting stuck in while loop >> >> Jeffrey Duda (1): >> ENH: Updates for multivariate metrics >> >> Kent Williams (18): >> PERF: Pull expensive GetInput/GetOutput calls out of inner loops >> COMP: propogate compiler selection & flags to FFTW build >> STYLE: Remove superfluous static_cast >> PERF: Pull expensive GetInput/GetOutput calls out of inner loops >> STYLE: Refine usage of static_cast >> BUG: B.Lowenkamp's changes to detect empty fields in Meta files >> BUG: isblank is missing on Microsoft Visual Studio. >> COMP: propogate compiler selection & flags to FFTW build >> BUG: Added test to verify metadata gets copied on file write w/Nrrd >> BUG: Add regression test to try very long filename w/MetaIO >> ENH: Allow change of tolerance in ImageToImageFilter >> DOC: Document spacing/direction tolerance access methods. >> BUG: Orientation vector in FiniteCylinderFunction >> PERF: hoist computation of norm outside Evaluate method. >> ENH: Add DCMTKImageIO to ITK >> BUG: Origin was lost reading HDF5 format images. >> COMP: add new gdcm test for SeriesReader + MetaDataDictionary >> COMP: add set methods for member variables where missing. >> >> Kris Zygmunt (5): >> PERF: Optimize patch-based denoiser tensor computations >> BUG: GPU tests sometimes fails >> BUG: SymmetricEigenAnalysis OrderByMagnitude bug >> PERF: speed up patch-based denoising tests >> BUG: Denoising 3D patch weights incorrect >> >> Marius Staring (1): >> ENH: Creating a typedef for the modified time >> >> Matthew McCormick (64): >> ENH: Allow custom name for ProcessObject Primary Input/Output. >> DOC: Clarify ProcessObject NumberOfRequiredInputs. >> STYLE: Fix style in itkBlockMatchingImageFilterTest. >> BUG: Fix BlockMatchingImageFilter for pipeline updating. >> DOC: Use one column in the Doxygen alphabetical class index. >> BUG: Fix GCC_XML and SWIG ExternalProject dependencies. >> BUG: Fix multi-object MetaIO reading for ASCII MetaVesselTube. >> STYLE: Improve readability and debugability in MetaScene. >> BUG: Fix multi-object MetaIO reading for ASCII MetaVesselTube. >> COMP: Fix QuadEdgeMesh doxygen warnings. >> ENH: Wrap new exponential Transform classes. >> STYLE: Use typedefs in TreeNode. >> STYLE: Use more descriptive names in itkSceneSpatialObject.hxx. >> STYLE: Cleanup WrapITK comments. >> BUG: Fix WrapITK GCCXML ExternalProject dependency. >> COMP: Make sure the VC script gets executed after gccxml installation. >> ENH: Use tarball for gccxml ExternalProject build. >> PERF: Use GetPrimaryOutput in ImageSource GetOutput. >> COMP: Add missing deque header for ANTSNeighborhoodCorrelation metric. >> BUG: Fix WrapITK GCCXML ExternalProject dependency. >> COMP: Make sure the VC script gets executed after gccxml installation. >> BUG: Fix multi-object MetaIO reading for ASCII MetaVesselTube. >> ENH: Bump release branch CMakeLists.txt version to 4.2.1. >> DOC: Update Doxygen config's for 1.8.2. >> DOC: Remove out-of-date files in Documentation/ >> STYLE: Use EXIT_SUCCESS in itkQuadEdgeMeshPolygonCellTest. >> DOC: Improve Doxygen HTML layout. >> STYLE: Improve style in itkGaussianImageSourceTest. >> COMP: GaussianImageSource unsigned comparison always false. >> BUG: Fix VelocityFieldTransform classes wrapping. >> ENH: Support Vector scalar product with CovariantVector. >> MetaIO: Remove the executable bit from metaFEMObject.{h,cxx}. >> MetaIO: Fix invalid memory dereference with empty Meta field. >> COMP: Fix invalid unsigned comparison with 1D instantiation. >> ENH: Archive testing data in Midas. >> BUG: FixedArray wrapping for 4D wrapping. >> ENH: Add operator=( FloatType & rhs ) to CompensatedSummation. >> BUG: Improve robustness of RayCastInterpolateImageFunction. >> BUG: VTKPolyDataMeshIO for Meshes with Tensor Pixels. #2961 >> COMP: Do not wrap WatershedImageFilter on Windows. >> BUG: Set the third-party libtiff VERSION to the correct value. >> COMP: Build with ITK_USE_SYSTEM_TIFF. #2967 >> COMP: Fix wrapping of itkNarrowBandCurvesLevelSetImageFilter. #2970. >> COMP: Do not run itkSampleToHistogramFilterTest4 with VC. >> COMP: Fix 1D wrapping of itkImageToVTKImageFilter. >> MetaIO: Prevent vessel tube from getting stuck in while loop >> MetaIO: Fix error in metaVesselTube ASCII reader. >> COMP: Disable DCMTK for MinGW. >> COMP: Ignore DCMTK build warnings. >> BUG: Use HTTP protocol by default for Git pull URLs. >> COMP: Better identification of MSVC90. >> STYLE: Fix style of BorderQuadEdgeMeshFilter. >> STYLE: Fix style of CleanQuadEdgeMeshFilter. >> STYLE: Rename itkMultiTransformBase to itkMultiTransform. >> COMP: Wrap MultiTransform. >> STYLE: Fix style in MultiTransform. >> COMP: Disabling the VideoStreamTest. >> COMP: Suppress fftw ExternalProject warnings. >> COMP: LabelImageInterpolateImageFunctionTest type conversion. >> COMP: Add include directory for ITK_USE_SYSTEM_HDF5. >> COMP: itkLabelImageGaussianInterpolateImageFunctionTest signed unsigned. >> COMP: Fix Doxygen warnings. >> COMP: Ignore libtool FFTW warnings with quote. >> COMP: Fix HDF5IO with ITK_USE_64BITS_IDS on Windows. >> >> Matthias Seise (1): >> COMP: Compile wrapITK for python2.7,64bit on windows >> >> Michael Stauffer (6): >> PERF: Optimize GetValue in v4 image metrics. >> ENH: Add "WithOnlyIndex" iterators. >> PERF: improve speed of ImageToImageMetricv4 and derived metrics >> ENH: Add parameter weighting option to Optimizersv4 >> ENH: Add MultiTransformBase >> DOC: Fix to ObjectToObjectOptimizerBase documentation >> >> Nick Tustison (20): >> ENH: Expanding HasLocalSupport to transform categories. >> ENH: Adding ability to prepend transform queue. >> ENH: Adding labeled point set metric. >> ENH: Add GetTransformCategory() to translation transform. >> ENH: Adding exponential transforms. >> ENH: Adding common transforms to be registered. >> BUG: Voxel size scaling needed >> ENH: Enable inverse for exponential transforms. >> ENH: BSpline automated scales estimation. >> BUG: Fix resampling of constant velocity field. >> BUG: Uninitialized variable. >> ENH: Reorganization of vel. field transforms. >> BUG: Control point grid origin wasn't set correctly. >> ENH: Adding option to permit voxel-based smoothing. >> ENH: Adding Multiple label STAPLE. >> BUG: Disp. field xfrm inverse not set correctly. >> ENH: Multiple metrics in registration methods. >> BUG: Incomplete dynamic casting. >> BUG: Correcting valgrind error. >> BUG: Set correct images in update field. >> >> Paul Novotny (1): >> COMP: Fix Spatial Object Test Segfaults >> >> Richard Beare (1): >> ENH: Functors for logic operations >> >> Willi Huber (2): >> COMP: WrapITK generates non-unique typedefs in FFT submodule >> COMP: Fix the wrapping for some modules >> >> Xiaoxiao Liu (3): >> ENH: Update LSTK version. >> BUG: Update LSTK version to sync with VTK 6.0. >> BUG: Fix ffmpeg VideoStream failing tests. >> >> >> Changes from v4.3.0 to v4.3.1: >> >> Bill Lorensen (1): >> COMP: Fix compile error in PhilipsRECImageIO >> >> Hans Johnson (1): >> COMP: Remove unnecessary BORLAND code >> >> Matthew McCormick (4): >> COMP: Fix HDF5 unused function for long long on Unix. >> BUG: Remove unused metric test content link. >> COMP: Add DLL to PATH for Python tests on Visual Studio. >> ENH: Bump CMakeLists.txt ITK version to 4.3.1. >> >> >> >> Enjoy ITK! >> _____________________________________ >> Powered by www.kitware.com >> >> Visit other Kitware open-source projects at >> http://www.kitware.com/opensource/opensource.html >> >> Kitware offers ITK Training Courses, for more information visit: >> http://www.kitware.com/products/protraining.php >> >> Please keep messages on-topic and check the ITK FAQ at: >> http://www.itk.org/Wiki/ITK_FAQ >> >> Follow this link to subscribe/unsubscribe: >> http://www.itk.org/mailman/listinfo/insight-users > _______________________________________________ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Kitware offers ITK Training Courses, for more information visit: http://kitware.com/products/protraining.php Please keep messages on-topic and check the ITK FAQ at: http://www.itk.org/Wiki/ITK_FAQ Follow this link to 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