On behalf of the Insight Toolkit community, we are proud to announce that ITK 4.6.0 release candidate 1 has been tagged and is available for testing!
To obtain the source code, git clone http://itk.org/ITK.git cd ITK git checkout -q --detach v4.6rc01 For more details, please see the Git documentation [1]. Please test the release candidate and share your experiences on the mailing list, issue tracker, and Gerrit Code Review. Please help identify issues submitting an Experimental build to the dashboard [2] with: ctest -M Experimental -T Configure -T Build -T Test -T Submit and notifying the mailing list. Testing your own applications against the RC is also appreciated. Those community members wishing to contribute by cleaning up the dashboard can find a list potential candidates on the issue tracker [3]. Please do not hesitate to ask about any aspect of the contribution process. Congratulations and well done to everyone that has contributed to this release. Release candidates are tagged every week. The final release is scheduled for July 14th. [1] http://www.itk.org/Wiki/ITK/Git [2] http://open.cdash.org/index.php?project=Insight [3] https://issues.itk.org/jira/issues/?jql=project%20%3D%20ITK%20AND%20fixVersion%20%3D%20%2220140714_ITKv4.6.0_FINAL%22%20AND%20status%20in%20(Open%2C%20%22In%20Progress%22%2C%20Reopened) New Features ------------------ * CMake improvements - Improved Remote Module support - Add ITK_FORBID_DOWNLOADS for package maintainers - ITK_USE_SYSTEM_EXPAT available * Filtering Improvements - Moved TransformToDisplacementField out of Review - An entire noise image generation module - http://hdl.handle.net/10380/3158 - Better pipeline support for ResampleImageFilter - Move MagnitudeAndPhaseToComplexImageFilter out of review - Setters for LabelMap overlay filters - More consistent filter progress reporting * ImageO improvements - Register the GE image formats by default - More IO modules are built as shared libraries - OpenFileForReading/Writing methods in ImageIO - Support for system tiff 4.0.0-4.0.2 (e.g. some Ubuntu versions) - Mangling to internal OpenJPEG - SCIFIO improvements * Infrastructure improvements - MetaDataObject print specialization for common types - Improvements to ResourceProbe and RealTimeClock - More Solve methods for VNLSparseLUSolverTraits - Output stream operator for LightObject exposed - FFTW bump to 3.3.3 * New Remote Modules - Skull stripper - http://hdl.handle.net/10380/3353 - Wiki examples - Sphinx examples - Variational registration - http://hdl.handle.net/10380/3460 - AnalyzeObjectMapIO - http://hdl.handle.net/1926/593 - FDFImageIO - SplitComponents - http://hdl.handle.net/10380/320 * Registrationv4 improvements - v4 regular step gradient descent optimizer - v4 amoeba optimizer - v4 exhaustive optimizer - v4 Powell optimizer - v4 one-plus-one-evolutionary optimizer - v4 LBFGS optimizer improvements - Use registration method classes as pipeline filters * Performance improvements - Registrationv4 - Histogram computation - Improved SmartPointer copy - CompositeTransform - Registration Jacobian re-use * Wrapping improvements - pygccxml 1.0.0 - .pth symlink usable in a virtualenv - Cleaner CMake configuration - SWIG and PCRE updated to 3.0.2, 8.34 - Latest GCCXML, which works with GCC 4.9 - Sweeping wrapping generation cleanup * Many style improvements -- ITK gets more stylish with every release! * Improved code coverage -- some measures put us over 85%! * *Lots* of important bug fixes * And more! See details in the log below List of changes since v4.5.0 -------------------------------------- Alexander Schmidt-Richberg (1): ENH: Added *.remote.cmake for remote module VariationalRegistration Ali Ghayoor (22): ENH: Add a registration test for LBFGS-B optimizer ENH: Add versorTransformOptimizerv4 class to ITKv4 BUG: Fix Coverity defects for LBFGS-B tests BUG: avoid division by zero in versorOptimizerv4 ENH: Add RegularStep gradient optimizer to ITKv4 DOC: The use of VersorTransformOptimizerv4 is deprecated. ENH: [SG]et optimizable params ITKv4 registration ENH: remove VersorTransformOptimizerv4 from ITKv4 ENH: Add AmoebaOptimizerv4 to ITKv4 registration ENH: Add ExhaustiveOptimizerv4 to ITKv4 registration ENH: Add PowellOptimizerv4 to ITKv4 registration BUG: define the GetStopConditionDescription as a public member funciton ENH: Add OnePlusOneEvolutionaryOptimizerv4 to ITKv4 registration BUG: lbfgsb optimizer could not be used in unbounded mode ENH: Add GetCurrentIteration to ExhaustiveOptimizerv4 ENH: Add currentIteration to the AmoebaOptimizerv4 PERF: Move the currentIteration to optimizersv4 base class ENH: Move the NumberOfIterations to the Optimizersv4 base class PERF: Change the parent class of RegularStepGradDescentv4 optimizer ENH: Add currentIteration to LBFGSBOptimizerv4 BUG: Fix memory leak in LBFGSBOptimzierv4 ENH: Add distance vector to KdTree search API Bill Lorensen (32): BUG: Tiff compression was broken and untested ENH: Add SetJPEGQuality method COMP: Missing breaks in swithc COMP: Uninitialized scalar field COMP: Uninitialized scalar field COMP: Unused pointer value ENH: Add SkullStrip Remote Module BUG: Tiff compression was broken and untested COMP: Missing breaks in swithc ENH: Improved message for missing IO factories COMP: Remove vcl_time and vcl_clock ENH: Remove vcl_math calls COMP: std::abs integral overloads not always provided COMP: Array versus singleton access COMP: Failed to check dynamic_cast results STYLE: Empty lines exceed 3 COMP: Uninitialized member data BUG: Two tests try to write the same file ENH: Uninitialized scalar field COMP: Constructor initialize list improvement COMP: Type warnings in constructors BUG: Copy/paste error COMP: Arguments of wrong type BUG: Buffer not null terminated BUG: Dereference after null check BUG: Division or modulo by zero ENH: Uninitialized scalar field BUG: Uninitialized scalar field BUG: Not restoring ostream format ENH: Add an exception safe state restore class for streams BUG: Not restoring ostream format ENH: Add WikiExamples as a remote module Brad King (4): COMP: Remove extra calls to cmake_minimum_required COMP: Fix cmake_minimum_required call order COMP: Set CMake Policies CMP0025 and CMP0042 as necessary COMP: Add missing call to cmake_minimum_required Bradley Lowekamp (91): ENH: Removed non-work TCL Examples DOC: Add missing const in Doxygen GetConstReferenceMacro BUG: Correctly re-throw exception to restore AbortEvent, ProcessAborted BUG: Emit StartEvent before a ProgressEvent BUG: Do not throw exception in Probes with mis-matched Stop BUG: Correctly re-throw exception to restore AbortEvent, ProcessAborted BUG: Adding export specification to Exception objects COMP: fix unused variable warning in abort test BUG: Adding export specification to Exception objects COMP: fix failing voronoi segmentation tests COMP: Remove explicit typed exception specifications ENH: Print Object name for observers of objects ENH: Adding progress reporting to some filters BUG: fixing grind peak progress to reach 1.0 COMP: use std::transform with static_cast to avoid conversion warning BUG: disable ipa-cp-clone in GDCM COMP: fix unused variable warning in abort test BUG: Do not throw exception in Probes with mis-matched Stop BUG: Address Shared Library issues with SCIFIO COMP: fix failing voronoi segmentation tests COMP: export required in explicitly defined NumbericTraits consts DOC: Make comment the Doxygen brief BUG: Adding missing raw data file to MINC test BUG: Fix linkage for SmartPointerForwardReference for clang 4 BUG: Fixing missing char type and doc for Thresholding filters BUG: Add support for system libtiff 4.0.0-4.0.2 BUG: remove second wrapping of BinShrink for scalars BUG: Fix LabelStatistics and LabelOverlap to require same image size PERF: Remove IncreaseFrequencyOfMeasurement from inner loops STYLE: Save deference iterator mapped type to variable PERF: switch to scanline and linear iterators COMP: Fix checks for system libtiff PERF: add namespace swap to SmartPoitners PERF: Use stl iterator algorithm in Iterator Partitioner BUG: Add mutex lock to MersenneTwister GetInstance STYLE: MersenneTwister move methods to cxx, docs STYLE: renaming files to standard ITK conventions ENH: Improving Noise Simulation Filters COMP: Explicitly make constant an unsigned int BUG: Fix uninitialized ivar in NoiseBaseImageFilter ENH: Make NoiseBaseImageFilter an abstract base class COMP: remove extraneous cast to double BUG: Same test function in different file causes conflict ENH: Explicitly specify internal linkage for internal observer objects ENH: Enable observed events to modify observers BUG: Catch exception in DeleteEvent STYLE: dynamic_cast to pointer does not throw COMP: Fix GCC warning about unused typedef in ConceptChecking COMP: Adding itkMacro.h for ITK_NULLPTR definition ENH: Use DynamicCastInDebugMod for name input macros BUG: Add support for signed char output BUG: Use NewMacro for Clone with TimeVaryingVElocityFieldTransforms ENH: Improve DataObjectDecorator with Modifiable, Graft ReleaseData ENH: Improve Resample's use of pipeline inputs ENH: Adding output of line and file on test failure ENH: Add InitialTransform as pipelined input with inplace option ENH: Use Transform base class as default template parameter ENH: Use InitialTransform in deformation examples COMP: add missing stl algorithm header for std::max COMP: add missing stl algorithm header for std::max Revert "ENH: Add Remote module group description to Doxygen." COMP: Remove incorrect override declaration ENH: Encapsulate expat header ENH: Make IntialMoving and InitialFixed transforms decorated inputs ENH: Update SimpleRegistration test BUG: Don't create new Decorator in GenerateData BUG: Use referenceImage for output information ENH: Adding some ImageIO libraries as shared ENH: Use TransformParametersAdaporBase on Transform base class ENH: Removing const_casts from ImageRegistrationv4 tests BUG: Add AllocateOutputs method to other v4 RegistrationMethods ENH: Update v4 registration tests to set initial transform BUG: Explicitly instantiate common MetaDataObjects BUG: Disable explicit visibility with OSX gcc and llvm gcc 4.2 ENH: Register GE Image formats COMP: Fix warning for overloading AllocateElements COMP: Suppress warning for using extern template instantiation PERF: Use shallow swap over deep assignment ENH: Use LearingRate member variable for scaling gradient ENH: support learning rate estimation for regular step optimizer COMP: Add space between string literals ENH: remove catch as dynamic_cast of pointers is nothrow BUG: Use rounding in TestingStretchIntensity for portability BUG: Warn if unsupported ITK_BRAINWEB_DATA_ROOT is being used ENH: Use MultiResolutionIteration event for registration ENH: Use exception safe copy-and-swap for assignment BUG: Use DEPENDS for dependent files STYLE: Add itkPrintSelfObjectMacro to improve indenting BUG: Print missing member variables ENH: Make more IO modules shared. COMP: Add missing header for EXIT_FAILURE Brian Helba (66): ENH: Disable tip to enable Uncrustify from SetupForDevelopment STYLE: Rename TValueType template parameters to TValue COMP: Fix compiler warnings with ITK_USE_SYSTEM_VXL BUG: Make all specializations NumericTrails::SetLength re-zero contents ENH: 3048, 3224: Refactor *SampleFilters to fix multiple issues ENH: Re-enable the array-bounds warnings for GCC 4.7 DOC: Fix a bug with SquaredEdgeLengthDecimationQuadEdgeMeshFilter DOC: Clean up comments in NiftiImageIO, for better Doxygen compatibility STYLE: Remove unused typedefs from AlgorithmsPrintTests BUG: Fix improper usage of VoronoiSegmentationRGBImageFilter ENH: Move OpenFileForReading/Writing from StreamingImageIO to parent class ENH: Improve OpenFileForReading/Writing logic and documentation BUG: Prevent ObjectFactoryBase from possibly throwing an exception STYLE: Make internal-use CMake variables lowercase in KWStyle.cmake PERF: Prevent FindKWStyle.cmake from being called multiple times BUG: Fix FindKWStyle crash when kwstyle returns empty version info BUG: Fix Coverity issue 1081600: Use after free BUG: Update SmoothingRecursiveYvvGaussianFilter to fix CMake warnings ENH: Update ImageIO classes to use OpenFileForReading/Writing COMP: Fix array subscript build warning COMP: Except Git's status messages from CTest reporting COMP: Suppress Coverity defect when Examples create an ITK object BUG: Fix uninitialized variable in GradientRecursiveGaussianImageFilter DOC: Fix documentation in VoronoiDiagram2DGenerator BUG: Coverity 1081062: Fix big parameter passed by value BUG: Update IOSTL to include new bug fixes upstream DOC: Improve documentation for StatisticsAlgorithm functions BUG: Coverity 1130670: Buffer not null terminated in GE4ImageIO BUG: Coverity 1103200: Copy into fixed size buffer in GE5ImageIO STYLE: Coverity 1080839: Dead default in switch in QuadEdgeMeshEulerOperatorJoinVertexTest STYLE: Coverity 1080963: Dereference after null check in TreeIteratorBase BUG: Coverity 1081009: Missing break in switch in GiftiMeshIO BUG: Coverity 1081422: Uninitialized pointer field in QuadEdgeMeshFrontBaseIterator STYLE: Coverity 1081140: Dereference before null check BUG: Coverity 1081547: Uninitialized pointer field in ConnectedRegionsMeshFilter STYLE: Coverity 40ee44a9: Self assignment in VoronoiSegmentationImageFilterTest BUG: Coverity 1081129: Dereference before null check in itkIOCommonTest COMP: Update libminc from upstream, fixing a compiler warning on OSX BUG: Coverity 1081019: Improper use of negative value in StringTools COMP: Fix downcast warnings BUG: Coverity 1103189: Big parameter passed by value in FindSampleBound COMP: Fix implicit conversion warning COMP: Fix unused variable warning on Intel compilers BUG: Fix uninitialized variable in GradientRecursiveGaussianImageFilter BUG: Make all specializations NumericTrails::SetLength re-zero contents BUG: Update SmoothingRecursiveYvvGaussianFilter remote module BUG: Update SplitComponents remote module COMP: Fix implicit conversion warning BUG: Update SmoothingRecursiveYvvGaussianFilter remote module COMP: Update LesionSizingToolkit remote module from upstream STYLE: Coverity 1103618-1103620: Structurally dead code STYLE: Coverity 1081585: Structurally dead code STYLE: Coverity 1081584: Structurally dead code STYLE: Coverity 1081583: Structurally dead code STYLE: Coverity 1081580: Structurally dead code STYLE: Coverity 1081570-1081578: Structurally dead code STYLE: Coverity 1081566-1081568: Structurally dead code STYLE: Coverity 1081564: Structurally dead code STYLE: Coverity 1080826-1080827: Logically dead code STYLE: Coverity 1080862: Logically dead code STYLE: Coverity 1081598: Unused pointer value BUG: Coverity 1103595: Uninitialized pointer field BUG: Coverity 1081508: Uninitialized pointer field BUG: Fix uninitialized pointer fields BUG: Coverity 1081381: Uninitialized scalar field STYLE: Coverity 1103107-1103116: Logically dead code Constantine Zakkaroff (1): DOC: HelloWorld Comments Edit for ITKSoftwareGuide David Cole (2): COMP: Eliminate some level 4 warnings BUG: Add missing header files to enable try_run tests to run without crashing Dirk Padfield (2): DOC: Improved comments and reorganized code for IsolatedConnected DOC: Corrected documentation for threshold boundaries. Eric Greveson (1): ENH: Add setters for the overlay functor in labelmap overlay filters. Fotis Drakopoulos (1): ENH: Adding GetFEMFilter method to PhysicsBasedNonRidgidRegistrationMethod. GCC-XML Upstream (1): pygccxml 1.0.0 (reduced) Gaëtan Lehmann (1): ENH: Importing files from Noise Simulation Article Gib Bogle (1): BUG: Windows BigTIFF errors: stat failure and lack of COMPRESSION_DEFLATE Google double-conversion Maintainers (1): COMP: Google double-conversion (reduced) Guillaume Pasero (1): ENH: Add mangling to internal OpenJpeg Hans Johnson (40): PERF: 15% speed improvement for registration PERF: Simplify conditionals in loop COMP: Conditional assert check warning unused var. COMP: SimpleITK linkage failure BUG: Missing Modified() call COMP: SimpleITK linkage failure BUG: Element numbers 1053, 1052 not hex BUG: Remove valgrind reported leak BUG: Add missing transform types to factory BUG: Missing Modified() call PERF: Reviewing code for facilitating compiler optimizations COMP: Fix const constructor for const arrays ENH: Add LBFGOptimizerv4(for BSPline registration) COMP: Test failure from numerical precision BUG: Memory leak introduced. COMP: Remove deprecated 'register' keyword ENH: Ignore autocompletion clang helper files ENH: Move to latest remote module tag STYLE: Improve testing of member Get/Set functions COMP: Update AnalyzeObjectMapIO replacing deprecated DOC: Fixed documentation regarding multi-threading DOC: Improved Image Representation PERF: Minimize redundant function calls PERF: Pull loop termination constants out of loop ENH: Refactoring the CompositeTransform class STYLE: Explicitly declare virtual for derived class member functions STYLE: Explicitly recognize virtual functions STYLE: Add ITK_NULLPTR supporting c++11 checks BUG: Missing parentheses for logic comparison STYLE: Explicitly declare virtual (cont. of 1c8609) STYLE: Consistency of threadID and threadId BUG: FFTConvolutionImageFilter outputs incorrect STYLE: GetStopConditionDescription abstract method PERF: Re-use jacobian rather than instantiation ENH: Improve test in preparation for performance testing PERF: Code simplifications for performance testing BUG: Missed an API change for Allocate STYLE: Remove unnecessary comments. BUG: Expose unusable functions BUG: Incomplete refactoring of member variable name Jean-Christophe Fillion-Robin (1): COMP: Fix "unused-local-typedefs" warnings Jens Wetzl (2): BUG: Fix race conditions in itkInvertDisplacementFieldImageFilter STYLE: Incorporated reviewer suggestions Jon Haitz Legarreta (8): ENH: New test for itkSigmoidTransferFunction. COMP: Fix type casting build warning. ENH: New test for itkLogSigmoidTransferFunction ENH: Added call to Print() method STYLE: Changed LogSigmoidTransferFunction template argument names. ENH: Added StatisticsRelabelImageFilterTest to testing BUG: Fix issues with the BinaryStatisticsOpeningImageFilter test COMP: Test for itkCustomColormapFunction Kent Williams (13): ENH: Add remote module for AnalyzeObjectMapIO BUG: incorrect loop var increment COMP: Update the DoubleConversion library upstream update script. ENH: Turn off DCMTK Logger messages by default COMP: fixed license test command in UpdateDoubleConversionFromGoogle.sh ENH: Add FDFImageIO as a remote module. PERF: replace image allocate followed by fillbuffer with allocate(true) COMP: Add test to verify Slope/Intercept handling BUG: GDCM reporting wrong spacing for some Media Types ENH: Add test for itkTestingStretchIntensityImageFilter COMP: Fix misplaced closing brace ENH: Remove try/catch exception handling around dynamic_catch ENH: Disallow vector multiply by itself Liza Shrestha (1): COMP: Added new unit tests for increasing code coverage Luis Ibanez (11): ENH: Add STLMeshIO remote module. BUG: Fixed module name IOSTL. COMP: Fixing instantiation of templated functions. BUG: Fixed Affine test 32bits. Precision checks. PERF: Accelerate initialize via selective testing. COMP: ShapeUniqueLabelMapFilter test was missing. STYLE: Coverity 1103119: Logically dead code BUG: itkLoggerThreadWrapper test was disabled. BUG: No DiscreteHessianGaussianImageFunctionTest. BUG: DiffusionTensorReconstruction lacked Progress BUG: TestingExtractSliceImageFilter lacked test. Luke Bloy (4): BUG: Fixes itkBoxSpatialObject part of issue ITK-3153 BUG: Fixes itkImageMaskSpatialObject part of issue ITK-3153 BUG: Fixes itkBoxSpatialObject part of issue ITK-3153 BUG: Fixes itkImageMaskSpatialObject part of issue ITK-3153 Marius Staring (2): ENH: add reset function to resource probe ENH: adding handle to RealTimeClock Mark Hiner (1): ENH: bump to latest scifio-imageio Martin Steghöfer (1): BUG: Match behavior of SimpleFastMutexLock on different platforms (#ITK-3248) Matthew McCormick (93): ENH: Bump CMakeLists.txt to version 4.6.0. BUG: Remove unused itkAffineTransformXX.txt content links. BUG: Avoid SimpleImageRegistration{Float,Double}Test output clobbering. BUG: Prevent MINC transform tests outputs from clobbering. BUG: Add random number generator seed for vnl_algo_test_sparse_lm. COMP: Update libminc to latest version. ENH: Only build tests for modules explicitly enabled. BUG: Remove unused forward declarations in RegistrationMethodsv4. COMP: Update libminc to latest version. ENH: Add REQUIRES_DISPLAY CTest label. ENH: Add SplitComponents Remote Module. DOC: Suggest MeshFileReader instead VTKPolyDataReader. DOC: Add itkSetGetDecoratedInputMacro definition for Doxygen. COMP: Bump DCMTK to fix warning. BUG: Wrap TransformFileReader, TransformFileWriter. BUG: Remove unused itkAffineTransformXX.txt content links. COMP: Wrap OptimizerParameterScalesEstimatorTemplate. COMP: CommandIterationUpdate has field whose type uses anonymous namespace. COMP: Do not use -fno-ipa-cp-clone with clang. ENH: Move TransformToDisplacementFieldSource out of Review. ENH: Bump ITK version to 4.5.1. COMP: ImageRegistrationHistogramPlotter Clone never referenced. ENH: Add the ITK_INSTALL_LIBRARY_DIR to WrapITK.pth. ENH: Bump SCIFIO to add wrapping. COMP: ImageRegistrationHistogramPlotter unchecked dynamic_cast. BUG: Fix Array memory leaks with non-const construction. BUG: Prevent ambiguous Array construction methods. COMP: HDF5 library version variables contain '@'. COMP: Remove add_custom_command(SOURCE... COMP: Wrap OptimizerParameterScalesEstimatorTemplate. BUG: Wrap TransformFileReader, TransformFileWriter. COMP: Add missing itkVerson.h header. COMP: LBFGSOptimizerBasev4 explicit Doxygen link request. ENH: Bump FFTW to 3.3.3. COMP: Duplicated VectorContainer wrapping for real types. BUG: Increase tolerance for itkFEMC0TriangularElement-NodalLoads-BCs STYLE: Add missing "Test" to GDCM test names and filenames. DOC: No ReferenceImage members in TransformToDisplacementFieldSource. COMP: Bump LesionSizingToolkit for Doxygen warnings. BUG: GDCM Series does not write z-spacing. COMP: Remove unreachable return statements. ENH: Add ITK_FORBID_DOWNLOADS option. ITK-3239 COMP: Bump SplitComponents Remote for Doxygen warnings. COMP: return will never be executed after exception thrown. BUG: Invalid read during ImageIOBase SetDirection. COMP: Fix failed itkTIFFImageIOCompressionTest merge. ENH: Bump version to 4.5.2. COMP: return will never be executed after exception thrown. COMP: SigmoidTransferFunction conversion from double. BUG: BoxImageFilter GenerateInputRequestRegion public -> protected. DOC: KernelImageFilter does not reimplement GenerateInputRequestedRegion. STYLE: Remove SigmoidTransferFunction .hxx doxy comments. BUG: Clean up Python module2module test. BUG: TestingExtractSliceImageFilterTest v3 direction strategy. STYLE: Remove duplicated TestingExtractSliceImageFilter doxygen. COMP: Use latex formula for HoughTransform doxygen. COMP: SigmoidTransferFunction members Alpha, Beta real type. STYLE: Fix SigmoidTransformFunction template argument names. COMP: BuildHeaderTest.py print_function import. BUG: Fix print function errors in pygccxml. BUG: Fix print functions in igenerator.py. ENH: Add Remote module group description to Doxygen. STYLE: Clean up MetaDataObjectBase. STYLE: Clean up MetaDataObject. ENH: Add unit test for MetaDataObject. ENH: Add MetaDataObject Print specialization for common types. STYLE: Fix template statements in SigmoidTransformFunction. BUG: Remove public MetaDataObject constructors. BUG: Add missing private copy constructors to MetaDataObject. BUG: Remove FEMRegistrationFilter debug code. DOC: Improve documentation and types for SplitRequestedRegion. Revert "Revert "ENH: Add Remote module group description to Doxygen."" DOC: Remove errant "+" in Remote_documentation. ENH: For shared libraries when wrapping. ENH: Collect all wrapping configuration checks in one place. ENH: Better CMake defaults with wrapping. ENH: Replace CSWIG preprocessor definition with ITK_WRAPPING. BUG: Remove old itkSampleBuildTest.cmake.in file. ENH: Move MagnitudeAndPhaseToComplexImageFilter out of Review. COMP: Fix Doxygen warnings in itkMetaDataObject.h. BUG: Exclude Remote Modules the default ON Group values. COMP: Documentation CMake target must come before add_custom_command. BUG: Assign Remote modules to groups more robustly. BUG: Remove MagnitudeAndPhaseWriteComplexImageFilter test from Review Module. BUG: Remove old tests from Review for classes that have been removed. DOC: Fix Software Guide LaTeX syntax errors in the examples. COMP: Define ITKCommon_EXPORT_EXPLICIT for Doxygen. COMP: Remove itkImageReadComplexWriteMagnitudeAndPhaseTest.cxx from list. BUG: Move MagnitudeAndPhaseToComplexImageFilter to the ImageIntensity module. COMP: StdStreamStateSave Doxygen include. ENH: Add Sphinx examples as a Remote Module. BUG: Remove ITK_INSTALL_NO_LIBRARIES and ITK_INSTALL_NO_DEVELOPMENT. ENH: Make ITK_WRAPPING INTERNAL. Matthew Woehlke (1): COMP: Fix egregious -Wcast-qual warnings Michka Popoff (53): BUG: Fix for the WrapITK.pth destination path COMP: Fixes the Python wrapping under OS 10.8.5 STYLE: Removed itkExtras folder BUG: Fix for the WrapITK.pth destination path COMP: Fixed itkQuasiNewtonOptimizerv4 wrapping warnings STYLE: 4 space indentation for python files COMP: Fixed itkGradientDescentOptimizerv4 wrapping warnings STYLE: Removed deprecated itk functions STYLE: Removed unused and misplaced python tests STYLE: Removed legacy python importing STYLE: Pep8 cleanup for the python files STYLE: Remove deprecated python strel function COMP: Fixed itkQuasiNewtonOptimizerv4 wrapping warnings COMP: Fixed itkGradientDescentOptimizerv4 wrapping warnings ENH: Use python warnings module for template warnings COMP: Duplicated wrapping for double in Array2D COMP: Update SWIG to 2.0.12 COMP: Require at least Python 2.6 for Python wrapping ENH: Remove python dl dependency ENH: Remove psyco import COMP: Update PCRE to 8.34 ENH: Update Swig to 3.0.0 STYLE: Remove WrapITK versions COMP: Remove cmp0011 in wrapping COMP: Remove unused code in ConfigureWrapping.cmake COMP: Remove clrLine in itkExtras COMP: Fix the python import and progress callbacks STYLE: Remove reference to CableSwig STYLE: Clean up BinaryThresholdImageFilter (python) COMP: Fix the Python ResampleImageFilter test ENH: Bump SCIFIO for OS X installation ENH: Bump SCIFIO for OS X installation COMP: Update PCRE to 8.35 STYLE: Remove unused compile all code for Python Wrapping ENH: Replace python print with print() function STYLE: Remove deprecated Python wrapping macros COMP: Fix failing header test COMP: Fix the writing of .idx files COMP: Fix python print import for .pth file creation COMP: Fix print import statement in itkExtras.py STYLE: Refactor swig call and code cleanup COMP: Fix for wrapping warnings (RealTimeClock and SimpleFastMutexLock) STYLE: Remove old Python examples COMP: Update gccxml ENH: Use pygccxml snapshot. ENH: Update to swig 3.0.2 DOC: Update commit instructions for JIRA bugtracker ENH: Update GCCXML BUG: Fix wrapping with dimension 2 only COMP: Temporarily hide pygccxml warnings BUG: Do not wrap BinaryMask3DMeshSource when building with 2D only COMP: Move itkMatrixCoefficients wrapping to Filtering module COMP: Fix wrapping with Core only Miguel Algaba (1): ENH: Added further Solve methods to VNLSparseLUSolverTraits Nick Tustison (2): BUG: Ignored the case for exceeding iteration limit. ENH: Preparing point set metrics for use with registration. Rashad M (1): STYLE: Allow system installed expat library with ITK_USE_SYSTEM_EXPAT=ON Sean McBride (6): BUG: initialize m_SmallBlock ivar in ctor; fixes garbage read BUG: changed some variables involved in shifting to unsigned COMP: Updated libminc to a78661bb592359ab86f417cc0c298299e593d808 BUG: initialize m_SmallBlock ivar in ctor; fixes garbage read PERF: Mark ImageRegistration8Test with RUNS_LONG COMP: workaround clang -Windent warnings by fixing indentation Sebastian Pölsterl (1): BUG: Return null pointer if class label does not exist (#3235) Taylor Braun-Jones (1): ENH: Expose the output stream operator for LightObject Vladimir Chalupecky (1): DOC: Fix description of SpatialObject::GetBoundingBox() Vladimir S. FONOV (3): COMP: Fixed libminc to build on Windows COMP: Updated libminc, hopefully reducing number of warnings COMP: Improved MINCIOTransform tests Wei Liu (1): BUG: Fixed a bug in ExpectationMaximiationMixtureModelEstimator. Yves Frederix (1): ENH: GeodesicActiveContourShapePrior deals with DerivativeSigma equal to zero Errors or omissions? Please fix them here: https://docs.google.com/a/kitware.com/document/d/1Ra_74zdJJqs_8n6LDSXGnKLqri-wmlcT51PdprJbckI/edit _______________________________________________ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Kitware offers ITK Training Courses, for more information visit: http://kitware.com/products/protraining.php Please keep messages on-topic and check the ITK FAQ at: http://www.itk.org/Wiki/ITK_FAQ Follow this link to subscribe/unsubscribe: http://public.kitware.com/mailman/listinfo/insight-developers
