This has always been my approach as well. Long ago I wrote a little script for 
post-processing the latex files.
Larry

On 29 Aug 2012, at 07:16, Gerwin Klein <gerwin.kl...@nicta.com.au> wrote:

> I use -D/document_dump extensively for producing papers. The Isabelle Latex 
> output pretty much always requires post processing for anything that has 
> higher type setting requirements. My standard setup these days is not to use 
> root.tex for papers, but only to generate .tex from .thy, then post-process, 
> then include manually in a master .tex file. 

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