>> the attached theory is the (unexpected) result of typing its content
>> naively and relying on auto indent.
>> Do others experience the same or is it maybe a settings problem?
> Can you check $ISABELLE_HOME_USER/etc/preferences if there are any
> changes on jedit_indent_input, jedit_indent_newline,
> jedit_indent_script, jedit_indent_script_limit?
> There is also a section about "Indentation" in the Isabelle/jEdit plugin
> options dialog.
> Basically everything should be set to the defaults for the best
> experience, although there are sometimes old habits to overcome as usual.
> You can also try http://isabelle.in.tum.de/website-Isabelle2017-RC1 with
> its fresh environment.

Deleting $ISABELLE_HOME_USER/etc/jedit worked, thanks.



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