Eroma created AIRAVATA-2254:
-------------------------------
Summary: New gateway user cannot create experiments in SEAGrid
production
Key: AIRAVATA-2254
URL: https://issues.apache.org/jira/browse/AIRAVATA-2254
Project: Airavata
Issue Type: Bug
Components: PGA PHP Web Gateway
Environment: https://seagrid.org
Reporter: Eroma
Assignee: Supun Chathuranga Nakandala
New user with gateway-user role cannot create experiments using the web portal.
Getting the error mkdir(): Permission denied
Same user was able to create experiments from seagrid desktop application but
then again the output files are not listed for COMPLETED experiment.
in gfac log has error [1]
2016-12-02 17:14:04,017 [pool-11-thread-209] ERROR
org.apache.airavata.gfac.impl.SSHUtils - Error Reading input Stream
2016-12-02 17:14:04,017 [pool-11-thread-209] ERROR
org.apache.airavata.gfac.impl.SSHUtils - Error Reading input Stream
java.lang.Exception: Error Reading input Stream
at
org.apache.airavata.gfac.impl.SSHUtils.scpThirdParty(SSHUtils.java:385)
at
org.apache.airavata.gfac.impl.HPCRemoteCluster.scpThirdParty(HPCRemoteCluster.java:178)
at
org.apache.airavata.gfac.impl.task.ArchiveTask.execute(ArchiveTask.java:139)
at
org.apache.airavata.gfac.impl.GFacEngineImpl.executeTask(GFacEngineImpl.java:771)
at
org.apache.airavata.gfac.impl.GFacEngineImpl.outputDataStaging(GFacEngineImpl.java:723)
at
org.apache.airavata.gfac.impl.GFacEngineImpl.executeTaskListFrom(GFacEngineImpl.java:327)
at
org.apache.airavata.gfac.impl.GFacEngineImpl.continueProcess(GFacEngineImpl.java:682)
at
org.apache.airavata.gfac.impl.GFacWorker.continueTaskExecution(GFacWorker.java:197)
at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:97)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
2016-12-02 17:14:04,018 [pool-11-thread-209] ERROR
org.apache.airavata.gfac.impl.HPCRemoteCluster - Retry count 3 exceeded for
transferring
from:/scratch/00421/ccguser/seagrid-workdirs/PROCESS_264d019e-57ce-4eef-a9cd-157737a30777/archive.tar
To:
/var/www/portals/gateway-user-data/seagrid/ProdSeagrid1/DefaultProject/AutoDock1.1480716701430/archive.tar
com.jcraft.jsch.JSchException: Error Reading input Stream
at
org.apache.airavata.gfac.impl.SSHUtils.scpThirdParty(SSHUtils.java:404)
at
org.apache.airavata.gfac.impl.HPCRemoteCluster.scpThirdParty(HPCRemoteCluster.java:178)
at
org.apache.airavata.gfac.impl.task.ArchiveTask.execute(ArchiveTask.java:139)
at
org.apache.airavata.gfac.impl.GFacEngineImpl.executeTask(GFacEngineImpl.java:771)
at
org.apache.airavata.gfac.impl.GFacEngineImpl.outputDataStaging(GFacEngineImpl.java:723)
at
org.apache.airavata.gfac.impl.GFacEngineImpl.executeTaskListFrom(GFacEngineImpl.java:327)
at
org.apache.airavata.gfac.impl.GFacEngineImpl.continueProcess(GFacEngineImpl.java:682)
at
org.apache.airavata.gfac.impl.GFacWorker.continueTaskExecution(GFacWorker.java:197)
at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:97)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
2016-12-02 17:14:04,019 [pool-11-thread-209] ERROR
org.apache.airavata.gfac.impl.task.ArchiveTask - Error! Archive task failed
org.apache.airavata.gfac.core.SSHApiException: Failed scp
file:/scratch/00421/ccguser/seagrid-workdirs/PROCESS_264d019e-57ce-4eef-a9cd-157737a30777/archive.tar
to remote file
/var/www/portals/gateway-user-data/seagrid/ProdSeagrid1/DefaultProject/AutoDock1.1480716701430/archive.tar
at
org.apache.airavata.gfac.impl.HPCRemoteCluster.scpThirdParty(HPCRemoteCluster.java:191)
at
org.apache.airavata.gfac.impl.task.ArchiveTask.execute(ArchiveTask.java:139)
at
org.apache.airavata.gfac.impl.GFacEngineImpl.executeTask(GFacEngineImpl.java:771)
at
org.apache.airavata.gfac.impl.GFacEngineImpl.outputDataStaging(GFacEngineImpl.java:723)
at
org.apache.airavata.gfac.impl.GFacEngineImpl.executeTaskListFrom(GFacEngineImpl.java:327)
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