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https://issues.apache.org/jira/browse/AIRAVATA-2290?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15780633#comment-15780633
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Eroma commented on AIRAVATA-2290:
---------------------------------
Now the job get submitted to the compute resource and also the input files.
Once the job is complemented outputs are not transferred back the data storage.
If archiving is enabled the archive folder is empty.
No errors displayed in PGA, experiment summary page.
gfac log contains errors related to output data staging.
2016-12-27 10:27:00 [pool-9-thread-3] ERROR o.a.a.gfac.impl.GFacEngineImpl -
expId: Clone_of_Gaussian_Comet1_779f14a3-ee1a-418b-8fc3-ac4f3a496fb3,
processId: PROCESS_06c8704b-3f1d-46bc-8431-ca92ef8d6254, taskId:
TASK_2c34552f-0052-43a4-9304-b04ae83ef9a3 type: DATA_STAGING,:- output staging
failed, reason: Failed update experiment and process inputs and outputs
> Experiments at failing at input DATA_STAGING
> --------------------------------------------
>
> Key: AIRAVATA-2290
> URL: https://issues.apache.org/jira/browse/AIRAVATA-2290
> Project: Airavata
> Issue Type: Bug
> Components: GFac
> Environment: dev.seagrid.org
> Reporter: Eroma
> Assignee: Shameera Rathnayaka
> Priority: Critical
>
> Currently none of the experiments are getting completed. Jobs on comet fails
> with error [1], experiment to launch jobs in BR2 seem to be blocked
> inEXECUTING, no significat errors found in logs but got [2] errors. Stampede
> experiments also failed with error similar to [1]
> [1]
> org.apache.airavata.gfac.core.GFacException: Error: userFriendly msg :Error
> while executing DATA_STAGING task, actual msg :expId:
> SLM1-CP2K-Stampede_9513859a-4b52-4d2c-8ae0-254abce28690, processId:
> PROCESS_dd45a568-9b3a-40b2-bd12-1a42b61c31a0, taskId:
> TASK_144e156d-5073-445f-abb7-74a9a57bd826, type: DATA_STAGING :- DATA_STAGING
> failed. Reason: Failed update experiment and process inputs and outputs at
> org.apache.airavata.gfac.impl.GFacEngineImpl.checkFailures(GFacEngineImpl.java:605)
> at
> org.apache.airavata.gfac.impl.GFacEngineImpl.inputDataStaging(GFacEngineImpl.java:586)
> at
> org.apache.airavata.gfac.impl.GFacEngineImpl.executeTaskListFrom(GFacEngineImpl.java:324)
> at
> org.apache.airavata.gfac.impl.GFacEngineImpl.executeProcess(GFacEngineImpl.java:263)
> at
> org.apache.airavata.gfac.impl.GFacWorker.executeProcess(GFacWorker.java:227)
> at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:86) at
> org.apache.airavata.common.logging.MDCUtil.lambda$wrapWithMDC$0(MDCUtil.java:21)
> at
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
> at java.lang.Thread.run(Thread.java:745)
> [2]
> 2016-12-22 11:55:13 [pool-3-thread-4] ERROR
> o.a.a.gfac.server.GfacServerHandler - Error creating zookeeper nodes
> 2016-12-22 11:55:13 [pool-3-thread-4] INFO o.a.a.m.core.impl.ProcessConsumer
> - Message Received with message id
> 'LAUNCH.PROCESS-2b7ebd56-c012-44b3-bb7b-e16350164000 and with message
> type:LAUNCHPROCESS, for
> processId:PROCESS_a645ca16-df8b-4cbf-b054-233aef831f15,
> expId:SLM1-AmberSander-BR2_5b841cb6-9d82-4868-a322-4e1547205ed8
> 2016-12-22 11:55:13 [pool-3-thread-4] INFO
> o.a.a.gfac.server.GfacServerHandler - Message Received with message id
> LAUNCHPROCESS and with message type:
> {}LAUNCH.PROCESS-2b7ebd56-c012-44b3-bb7b-e16350164000
> 2016-12-22 11:55:14 [pool-3-thread-4] INFO o.a.a.gfac.impl.GFacEngineImpl -
> expId: SLM1-AmberSander-BR2_5b841cb6-9d82-4868-a322-4e1547205ed8, processId:
> PROCESS_a645ca16-df8b-4cbf-b054-233aef831f15, get process cancel data from
> zookeeper node
> /experiments/SLM1-AmberSander-BR2_5b841cb6-9d82-4868-a322-4e1547205ed8/PROCESS_a645ca16-df8b-4cbf-b054-233aef831f15/cancelListener
> 2016-12-22 11:55:15 [pool-3-thread-4] ERROR
> o.a.a.gfac.server.GfacServerHandler - Error creating zookeeper nodes
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