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https://issues.apache.org/jira/browse/AIRAVATA-2219?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15785958#comment-15785958
]
Eroma commented on AIRAVATA-2219:
---------------------------------
with latest even with the / the abaqus application is failing in
dev.seagrid.org.
> With groovey scripts some of the post job commands with special characters
> are failing
> --------------------------------------------------------------------------------------
>
> Key: AIRAVATA-2219
> URL: https://issues.apache.org/jira/browse/AIRAVATA-2219
> Project: Airavata
> Issue Type: Bug
> Environment: https://dev.seagrid.org
> Reporter: Eroma
> Assignee: Shameera Rathnayaka
> Fix For: 0.17
>
>
> when running application Abaqus which has pre job command
> abq_job=${baseinp%.*}
> job submission fails with error [1] in gfac log.
> [1]
> 2016-11-09 14:46:40 [pool-7-thread-41] ERROR o.a.airavata.gfac.core.GFacUtils
> - Error while creating groovy map
> groovy.lang.GroovyRuntimeException: Failed to parse template script (your
> template may contain an error or be trying to use expressions not currently
> supported): startup failed:
> GStringTemplateScript74.groovy: 2: unexpected token: . @ line 2, column 66.
> > out << """abq_job=${baseinp%.*}"""}}
> ^
> 1 error
> at
> groovy.text.GStringTemplateEngine$GStringTemplate.<init>(GStringTemplateEngine.java:198)
> at
> groovy.text.GStringTemplateEngine.createTemplate(GStringTemplateEngine.java:110)
> at groovy.text.TemplateEngine.createTemplate(TemplateEngine.java:41)
> at
> org.apache.airavata.gfac.core.GFacUtils.parseCommands(GFacUtils.java:788)
> at
> org.apache.airavata.gfac.core.GFacUtils.lambda$createGroovyMap$3(GFacUtils.java:599)
> at
> java.util.stream.ReferencePipeline$3$1.accept(ReferencePipeline.java:193)
> at
> java.util.stream.SortedOps$SizedRefSortingSink.end(SortedOps.java:352)
> at
> java.util.stream.AbstractPipeline.copyInto(AbstractPipeline.java:482)
> at
> java.util.stream.AbstractPipeline.wrapAndCopyInto(AbstractPipeline.java:471)
> at
> java.util.stream.ReduceOps$ReduceOp.evaluateSequential(ReduceOps.java:708)
> at
> java.util.stream.AbstractPipeline.evaluate(AbstractPipeline.java:234)
> at
> java.util.stream.ReferencePipeline.collect(ReferencePipeline.java:499)
> at
> org.apache.airavata.gfac.core.GFacUtils.createGroovyMap(GFacUtils.java:600)
> at
> org.apache.airavata.gfac.impl.task.DefaultJobSubmissionTask.execute(DefaultJobSubmissionTask.java:75)
> at
> org.apache.airavata.gfac.impl.GFacEngineImpl.executeTask(GFacEngineImpl.java:773)
> at
> org.apache.airavata.gfac.impl.GFacEngineImpl.executeJobSubmission(GFacEngineImpl.java:469)
> at
> org.apache.airavata.gfac.impl.GFacEngineImpl.executeTaskListFrom(GFacEngineImpl.java:345)
> at
> org.apache.airavata.gfac.impl.GFacEngineImpl.executeProcess(GFacEngineImpl.java:245)
> at
> org.apache.airavata.gfac.impl.GFacWorker.executeProcess(GFacWorker.java:227)
> at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:86)
> at
> org.apache.airavata.common.logging.MDCUtil.lambda$wrapWithMDC$0(MDCUtil.java:21)
> at
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
> at java.lang.Thread.run(Thread.java:745)
> 2016-11-09 14:46:40 [pool-7-thread-41] ERROR
> o.a.a.g.i.t.DefaultJobSubmissionTask - JobSubmission failed
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