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https://issues.apache.org/jira/browse/AIRAVATA-2674?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16364662#comment-16364662
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ASF GitHub Bot commented on AIRAVATA-2674:
------------------------------------------

stephenpaul2727 opened a new pull request #81: AIRAVATA-2674 FIXED
URL: https://github.com/apache/airavata-php-gateway/pull/81
 
 
   Added Fix to Experiment Utilities to replace spaces with underscores.
   
   

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> Re-write file names which has spaces in them
> --------------------------------------------
>
>                 Key: AIRAVATA-2674
>                 URL: https://issues.apache.org/jira/browse/AIRAVATA-2674
>             Project: Airavata
>          Issue Type: Sub-task
>          Components: Airavata API, PGA PHP Web Gateway
>    Affects Versions: 0.18
>            Reporter: Eroma
>            Priority: Major
>             Fix For: 0.18
>
>
> Currently airavata could not handle experiment input files with space in the 
> file name. When an experiment is submitted with a space in the name it fails 
> at data staging with errors [1] in the log
>  
> Users can be educated but this could keep occurring with new users, etc...
> File name to rewrite to remove the space or to replace it wth another 
> character.
>  
> [1]
> org.apache.airavata.gfac.core.GFacException: Error: userFriendly msg :Error 
> while executing DATA_STAGING task, actual msg :expId: 
> MACs_in_Metagenomes_27ef130b-9428-4b74-8842-325a36bc544c, processId: 
> PROCESS_42be4be6-161f-428d-8539-5f375493179a, taskId: 
> TASK_b8f396cd-0e4e-4564-9101-5bcd4b4ddb6f, type: DATA_STAGING :- DATA_STAGING 
> failed. Reason: Source or destination uri is not correct source : 
> file://searchsra.scigap.org:/var/www/portals/gateway-user-data/searching-sra/aalker/DefaultProject/MACs_in_Metagenomes1518210858/SRR_Acc_List
>  (1).txt, destination : 
> SCP://g...@js-169-158.jetstream-cloud.org:22/home/gw/airavata-workdirs/PROCESS_42be4be6-161f-428d-8539-5f375493179a/
>  at 
> org.apache.airavata.gfac.impl.GFacEngineImpl.checkFailures(GFacEngineImpl.java:628)
>  at 
> org.apache.airavata.gfac.impl.GFacEngineImpl.inputDataStaging(GFacEngineImpl.java:609)
>  at 
> org.apache.airavata.gfac.impl.GFacEngineImpl.executeTaskListFrom(GFacEngineImpl.java:347)
>  at 
> org.apache.airavata.gfac.impl.GFacEngineImpl.executeProcess(GFacEngineImpl.java:286)
>  at 
> org.apache.airavata.gfac.impl.GFacWorker.executeProcess(GFacWorker.java:227) 
> at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:86) at 
> org.apache.airavata.common.logging.MDCUtil.lambda$wrapWithMDC$0(MDCUtil.java:40)
>  at 
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
>  at 
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
>  at java.lang.Thread.run(Thread.java:748)



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