Eroma created AIRAVATA-2740:
-------------------------------
Summary: Non-existing file transfer has failed the experiment
Key: AIRAVATA-2740
URL: https://issues.apache.org/jira/browse/AIRAVATA-2740
Project: Airavata
Issue Type: Bug
Components: helix implementation
Affects Versions: 0.18
Environment: http://149.165.168.248:8008/
Reporter: Eroma
Assignee: Dimuthu Upeksha
# Due to an 0 byte input file upload tan expected output file is not generated
in the application execution.
# The airavata tries to transfer the file an error is thrown as the file is
not existing.
# But a 0 byte output file is created in the gateway data storage and user can
view it.
# Exception is thrown [1]
# If a specified output file is not in the working directory, it should be
ignored, not create an empty file in the storage
# If a 0 byte file exists in the working directory it should be transferred to
the storage.
[1]
org.apache.airavata.agents.api.AgentException: java.io.FileNotFoundException:
/tmp/PROCESS_ac1064b1-226e-491c-91e6-303448f05f16/temp_inputs/Gaussian.log (No
such file or directory) at
org.apache.airavata.helix.agent.ssh.SshAgentAdaptor.copyFileTo(SshAgentAdaptor.java:307)
at
org.apache.airavata.helix.agent.storage.StorageResourceAdaptorImpl.uploadFile(StorageResourceAdaptorImpl.java:98)
at
org.apache.airavata.helix.impl.task.staging.DataStagingTask.transferFileToStorage(DataStagingTask.java:158)
at
org.apache.airavata.helix.impl.task.staging.OutputDataStagingTask.onRun(OutputDataStagingTask.java:163)
at
org.apache.airavata.helix.impl.task.AiravataTask.onRun(AiravataTask.java:265)
at org.apache.airavata.helix.core.AbstractTask.run(AbstractTask.java:82) at
org.apache.helix.task.TaskRunner.run(TaskRunner.java:70) at
java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at
java.util.concurrent.FutureTask.run(FutureTask.java:266) at
java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:180)
at
java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:293)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:748) Caused by:
java.io.FileNotFoundException:
/tmp/PROCESS_ac1064b1-226e-491c-91e6-303448f05f16/temp_inputs/Gaussian.log (No
such file or directory) at java.io.FileInputStream.open0(Native Method) at
java.io.FileInputStream.open(FileInputStream.java:195) at
java.io.FileInputStream.(FileInputStream.java:138) at
java.io.FileInputStream.(FileInputStream.java:93) at
org.apache.airavata.helix.agent.ssh.SshAgentAdaptor.copyFileTo(SshAgentAdaptor.java:276)
... 13 more
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