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https://issues.apache.org/jira/browse/AIRAVATA-2940?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16684215#comment-16684215
]
Dimuthu Upeksha commented on AIRAVATA-2940:
-------------------------------------------
Still couldn't identify the cause for the issue but retrying on the API gives
the result. So fixed in helix side to retry if an API call is failed
https://github.com/apache/airavata/commit/274c73ffcc226daabfbe213a27b8f10ad53dac0b
> Sporadic JPA errors when invoking Registry Server APIs
> ------------------------------------------------------
>
> Key: AIRAVATA-2940
> URL: https://issues.apache.org/jira/browse/AIRAVATA-2940
> Project: Airavata
> Issue Type: Bug
> Components: Registry API
> Affects Versions: 0.17
> Environment: staging
> Reporter: Dimuthu Upeksha
> Assignee: Dimuthu Upeksha
> Priority: Major
>
> This issue occurs randomly at different registry components. It seems like a
> general JPA bug or a misuse of JPA APIs in registry code.
> 2018-11-10 18:29:28,003 [pool-10-thread-208241] ERROR
> o.a.a.r.c.a.c.i.ApplicationDeploymentImpl - Error while retrieving
> application deployment...
> org.apache.airavata.registry.cpi.AppCatalogException:
> <openjpa-2.2.0-r422266:1244990 fatal user error>
> org.apache.openjpa.persistence.InvalidStateException: The context has been
> closed. The stack trace at which the context was closed is available if
> Runtime=TRACE logging is enabled.
> at
> org.apache.airavata.registry.core.app.catalog.resources.LibraryApendPathResource.get(LibraryApendPathResource.java:214)
> at
> org.apache.airavata.registry.core.app.catalog.util.AppCatalogThriftConversion.getApplicationDeploymentDescription(AppCatalogThriftConversion.java:758)
> at
> org.apache.airavata.registry.core.app.catalog.impl.ApplicationDeploymentImpl.getApplicationDeployement(ApplicationDeploymentImpl.java:326)
> at
> org.apache.airavata.registry.api.service.handler.RegistryServerHandler.getApplicationDeployment(RegistryServerHandler.java:1211)
> at
> org.apache.airavata.registry.api.RegistryService$Processor$getApplicationDeployment.getResult(RegistryService.java:14835)
> at
> org.apache.airavata.registry.api.RegistryService$Processor$getApplicationDeployment.getResult(RegistryService.java:14819)
> at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> at
> org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:286)
> at
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
> at java.lang.Thread.run(Thread.java:748)
> Caused by: org.apache.openjpa.persistence.InvalidStateException: The context
> has been closed. The stack trace at which the context was closed is available
> if Runtime=TRACE logging is enabled.
> at org.apache.openjpa.kernel.BrokerImpl.assertOpen(BrokerImpl.java:4676)
> at org.apache.openjpa.kernel.BrokerImpl.beginOperation(BrokerImpl.java:1930)
> at org.apache.openjpa.kernel.BrokerImpl.commit(BrokerImpl.java:1503)
> at
> org.apache.openjpa.kernel.DelegatingBroker.commit(DelegatingBroker.java:933)
> at
> org.apache.openjpa.persistence.EntityManagerImpl.commit(EntityManagerImpl.java:570)
> at
> org.apache.airavata.registry.core.app.catalog.resources.LibraryApendPathResource.get(LibraryApendPathResource.java:205)
> ... 11 common frames omitted
> 2018-11-10 18:29:28,003 [pool-10-thread-208241] ERROR
> o.a.a.r.a.s.h.RegistryServerHandler -
> comet.sdsc.edu_Ultrascan_0091a13a-1fe5-41cf-8708-79a987e3021a
> org.apache.airavata.registry.cpi.AppCatalogException:
> org.apache.airavata.registry.cpi.AppCatalogException:
> <openjpa-2.2.0-r422266:1244990 fatal user error>
> org.apache.openjpa.persistence.InvalidStateException: The context has been
> closed. The stack trace at which the context was closed is available if
> Runtime=TRACE logging is enabled.
> at
> org.apache.airavata.registry.core.app.catalog.impl.ApplicationDeploymentImpl.getApplicationDeployement(ApplicationDeploymentImpl.java:329)
> at
> org.apache.airavata.registry.api.service.handler.RegistryServerHandler.getApplicationDeployment(RegistryServerHandler.java:1211)
> at
> org.apache.airavata.registry.api.RegistryService$Processor$getApplicationDeployment.getResult(RegistryService.java:14835)
> at
> org.apache.airavata.registry.api.RegistryService$Processor$getApplicationDeployment.getResult(RegistryService.java:14819)
> at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> at
> org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:286)
> at
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
> at java.lang.Thread.run(Thread.java:748)
> Caused by: org.apache.airavata.registry.cpi.AppCatalogException:
> <openjpa-2.2.0-r422266:1244990 fatal user error>
> org.apache.openjpa.persistence.InvalidStateException: The context has been
> closed. The stack trace at which the context was closed is available if
> Runtime=TRACE logging is enabled.
> at
> org.apache.airavata.registry.core.app.catalog.resources.LibraryApendPathResource.get(LibraryApendPathResource.java:214)
> at
> org.apache.airavata.registry.core.app.catalog.util.AppCatalogThriftConversion.getApplicationDeploymentDescription(AppCatalogThriftConversion.java:758)
> at
> org.apache.airavata.registry.core.app.catalog.impl.ApplicationDeploymentImpl.getApplicationDeployement(ApplicationDeploymentImpl.java:326)
> ... 9 common frames omitted
> Caused by: org.apache.openjpa.persistence.InvalidStateException: The context
> has been closed. The stack trace at which the context was closed is available
> if Runtime=TRACE logging is enabled.
> at org.apache.openjpa.kernel.BrokerImpl.assertOpen(BrokerImpl.java:4676)
> at org.apache.openjpa.kernel.BrokerImpl.beginOperation(BrokerImpl.java:1930)
> at org.apache.openjpa.kernel.BrokerImpl.commit(BrokerImpl.java:1503)
> at
> org.apache.openjpa.kernel.DelegatingBroker.commit(DelegatingBroker.java:933)
> at
> org.apache.openjpa.persistence.EntityManagerImpl.commit(EntityManagerImpl.java:570)
> at
> org.apache.airavata.registry.core.app.catalog.resources.LibraryApendPathResource.get(LibraryApendPathResource.java:205)
> ... 11 common frames omitted
> 2018-11-10 18:29:28,144 [pool-30-thread-3] INFO
> o.a.a.o.s.OrchestratorServerHandler - expId:
> US3-ADEV_5b40ecc5-7aea-4b42-affc-9a3c6ff7d82c, processId:
> PROCESS_0fccaaab-7494-4ae7-a1bc-23a0ffd67b8d :- Process status changed event
> received for status FAILED
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