[
https://issues.apache.org/jira/browse/ARROW-6509?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]
Prudhvi Porandla updated ARROW-6509:
------------------------------------
Description:
This seems to happen more or less frequently on the Python - Java build (with
jpype enabled).
See warnings and errors starting from
[https://travis-ci.org/apache/arrow/jobs/583069089#L6662]
Additional info:
JVM crash happens on Ubuntu 16.04 when cpp lib is built with Mimalloc allocator
instead of jemalloc. Below is the stacktrace from core dump:
{{(gdb) bt}}
{{#0 0x00007fbb13ed3428 in __GI_raise (sig=sig@entry=6) at
../sysdeps/unix/sysv/linux/raise.c:54}}
{{#1 0x00007fbb13ed502a in __GI_abort () at abort.c:89}}
{{#2 0x00007fbb131d7149 in ?? () from
/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
{{#3 0x00007fbb1338ad27 in ?? () from
/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
{{#4 0x00007fbb131e0e4f in JVM_handle_linux_signal () from
/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
{{#5 0x00007fbb131d3e48 in ?? () from
/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
{{#6 <signal handler called>}}
{{#7 mi_page_free_list_extend (heap=0x0, page=0x7fbb133de221,
extend=140440661634032, stats=0x7fbae3bfac00)}}
\{{ at
/home/prudhvi/arrow/cpp-build/mimalloc_ep-prefix/src/mimalloc_ep/src/page.c:449}}
{{#8 0x00007fbaaedff652 in _mi_segment_page_of (segment=0x7fbaaedff652
<_mi_segment_page_of+18>, p=0x7fbae3bfab30)}}
\{{ at
/home/prudhvi/arrow/cpp-build/mimalloc_ep-prefix/src/mimalloc_ep/include/mimalloc-internal.h:232}}
\{{#9 0x00007fbaaedff7bb in mi_heap_malloc_zero_aligned_at
(heap=0x7fbaaedff652 <_mi_segment_page_of+18>, size=140440661633840,
alignment=140439800379296, }}
\{{ offset=139646092684112, zero=187) at
/home/prudhvi/arrow/cpp-build/mimalloc_ep-prefix/src/mimalloc_ep/src/alloc-aligned.c:31}}
\{{#10 0x00007fbaaedff7e0 in mi_heap_malloc_zero_aligned_at
(heap=0x7fbab069f7a0 <_mi_heap_empty>, size=139642473343568,
alignment=140439774558139, }}
\{{ offset=140440661633872, zero=186) at
/home/prudhvi/arrow/cpp-build/mimalloc_ep-prefix/src/mimalloc_ep/src/alloc-aligned.c:33}}
{{#11 0x00007fbaaee00941 in mi_option_init (desc=0x7fbaaedff652
<_mi_segment_page_of+18>)}}
\{{ at
/home/prudhvi/arrow/cpp-build/mimalloc_ep-prefix/src/mimalloc_ep/src/options.c:204}}
{{#12 0x00007fbb13ed7ff8 in __run_exit_handlers (status=1,
listp=0x7fbb142625f8 <__exit_funcs>,
run_list_atexit=run_list_atexit@entry=true) at exit.c:82}}
{{#13 0x00007fbb13ed8045 in __GI_exit (status=<optimized out>) at exit.c:104}}
{{#14 0x00007fbb12f76a7c in ?? () from
/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
{{#15 0x00007fbb13391587 in ?? () from
/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
{{#16 0x00007fbb1338ede7 in ?? () from
/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
{{#17 0x00007fbb133900cf in ?? () from
/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
{{#18 0x00007fbb133905f2 in ?? () from
/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
{{#19 0x00007fbb131d6102 in ?? () from
/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
{{#20 0x00007fbb1386a6ba in start_thread (arg=0x7fbae3bfb700) at
pthread_create.c:333}}
{{#21 0x00007fbb13fa541d in clone () at
../sysdeps/unix/sysv/linux/x86_64/clone.S:109}}
was:
This seems to happen more or less frequently on the Python - Java build (with
jpype enabled).
See warnings and errors starting from
[https://travis-ci.org/apache/arrow/jobs/583069089#L6662]
JVM crash happens on Ubuntu 16.04 when cpp lib is built with Mimalloc allocator
instead of jemalloc. Below is the stacktrace from core dump:
{{(gdb) bt}}
{{#0 0x00007fbb13ed3428 in __GI_raise (sig=sig@entry=6) at
../sysdeps/unix/sysv/linux/raise.c:54}}
{{#1 0x00007fbb13ed502a in __GI_abort () at abort.c:89}}
{{#2 0x00007fbb131d7149 in ?? () from
/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
{{#3 0x00007fbb1338ad27 in ?? () from
/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
{{#4 0x00007fbb131e0e4f in JVM_handle_linux_signal () from
/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
{{#5 0x00007fbb131d3e48 in ?? () from
/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
{{#6 <signal handler called>}}
{{#7 mi_page_free_list_extend (heap=0x0, page=0x7fbb133de221,
extend=140440661634032, stats=0x7fbae3bfac00)}}
\{{ at
/home/prudhvi/arrow/cpp-build/mimalloc_ep-prefix/src/mimalloc_ep/src/page.c:449}}
{{#8 0x00007fbaaedff652 in _mi_segment_page_of (segment=0x7fbaaedff652
<_mi_segment_page_of+18>, p=0x7fbae3bfab30)}}
\{{ at
/home/prudhvi/arrow/cpp-build/mimalloc_ep-prefix/src/mimalloc_ep/include/mimalloc-internal.h:232}}
\{{#9 0x00007fbaaedff7bb in mi_heap_malloc_zero_aligned_at
(heap=0x7fbaaedff652 <_mi_segment_page_of+18>, size=140440661633840,
alignment=140439800379296, }}
\{{ offset=139646092684112, zero=187) at
/home/prudhvi/arrow/cpp-build/mimalloc_ep-prefix/src/mimalloc_ep/src/alloc-aligned.c:31}}
\{{#10 0x00007fbaaedff7e0 in mi_heap_malloc_zero_aligned_at
(heap=0x7fbab069f7a0 <_mi_heap_empty>, size=139642473343568,
alignment=140439774558139, }}
\{{ offset=140440661633872, zero=186) at
/home/prudhvi/arrow/cpp-build/mimalloc_ep-prefix/src/mimalloc_ep/src/alloc-aligned.c:33}}
{{#11 0x00007fbaaee00941 in mi_option_init (desc=0x7fbaaedff652
<_mi_segment_page_of+18>)}}
\{{ at
/home/prudhvi/arrow/cpp-build/mimalloc_ep-prefix/src/mimalloc_ep/src/options.c:204}}
{{#12 0x00007fbb13ed7ff8 in __run_exit_handlers (status=1,
listp=0x7fbb142625f8 <__exit_funcs>,
run_list_atexit=run_list_atexit@entry=true) at exit.c:82}}
{{#13 0x00007fbb13ed8045 in __GI_exit (status=<optimized out>) at exit.c:104}}
{{#14 0x00007fbb12f76a7c in ?? () from
/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
{{#15 0x00007fbb13391587 in ?? () from
/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
{{#16 0x00007fbb1338ede7 in ?? () from
/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
{{#17 0x00007fbb133900cf in ?? () from
/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
{{#18 0x00007fbb133905f2 in ?? () from
/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
{{#19 0x00007fbb131d6102 in ?? () from
/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
{{#20 0x00007fbb1386a6ba in start_thread (arg=0x7fbae3bfb700) at
pthread_create.c:333}}
{{#21 0x00007fbb13fa541d in clone () at
../sysdeps/unix/sysv/linux/x86_64/clone.S:109}}
> [C++][Gandiva] Re-enable Gandiva JNI tests and fix Travis CI failure
> --------------------------------------------------------------------
>
> Key: ARROW-6509
> URL: https://issues.apache.org/jira/browse/ARROW-6509
> Project: Apache Arrow
> Issue Type: Bug
> Components: Continuous Integration, Java
> Reporter: Antoine Pitrou
> Assignee: Prudhvi Porandla
> Priority: Critical
> Labels: pull-request-available
> Fix For: 0.15.0
>
> Time Spent: 3h 50m
> Remaining Estimate: 0h
>
> This seems to happen more or less frequently on the Python - Java build (with
> jpype enabled).
> See warnings and errors starting from
> [https://travis-ci.org/apache/arrow/jobs/583069089#L6662]
>
> Additional info:
> JVM crash happens on Ubuntu 16.04 when cpp lib is built with Mimalloc
> allocator instead of jemalloc. Below is the stacktrace from core dump:
> {{(gdb) bt}}
> {{#0 0x00007fbb13ed3428 in __GI_raise (sig=sig@entry=6) at
> ../sysdeps/unix/sysv/linux/raise.c:54}}
> {{#1 0x00007fbb13ed502a in __GI_abort () at abort.c:89}}
> {{#2 0x00007fbb131d7149 in ?? () from
> /usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
> {{#3 0x00007fbb1338ad27 in ?? () from
> /usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
> {{#4 0x00007fbb131e0e4f in JVM_handle_linux_signal () from
> /usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
> {{#5 0x00007fbb131d3e48 in ?? () from
> /usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
> {{#6 <signal handler called>}}
> {{#7 mi_page_free_list_extend (heap=0x0, page=0x7fbb133de221,
> extend=140440661634032, stats=0x7fbae3bfac00)}}
> \{{ at
> /home/prudhvi/arrow/cpp-build/mimalloc_ep-prefix/src/mimalloc_ep/src/page.c:449}}
> {{#8 0x00007fbaaedff652 in _mi_segment_page_of (segment=0x7fbaaedff652
> <_mi_segment_page_of+18>, p=0x7fbae3bfab30)}}
> \{{ at
> /home/prudhvi/arrow/cpp-build/mimalloc_ep-prefix/src/mimalloc_ep/include/mimalloc-internal.h:232}}
> \{{#9 0x00007fbaaedff7bb in mi_heap_malloc_zero_aligned_at
> (heap=0x7fbaaedff652 <_mi_segment_page_of+18>, size=140440661633840,
> alignment=140439800379296, }}
> \{{ offset=139646092684112, zero=187) at
> /home/prudhvi/arrow/cpp-build/mimalloc_ep-prefix/src/mimalloc_ep/src/alloc-aligned.c:31}}
> \{{#10 0x00007fbaaedff7e0 in mi_heap_malloc_zero_aligned_at
> (heap=0x7fbab069f7a0 <_mi_heap_empty>, size=139642473343568,
> alignment=140439774558139, }}
> \{{ offset=140440661633872, zero=186) at
> /home/prudhvi/arrow/cpp-build/mimalloc_ep-prefix/src/mimalloc_ep/src/alloc-aligned.c:33}}
> {{#11 0x00007fbaaee00941 in mi_option_init (desc=0x7fbaaedff652
> <_mi_segment_page_of+18>)}}
> \{{ at
> /home/prudhvi/arrow/cpp-build/mimalloc_ep-prefix/src/mimalloc_ep/src/options.c:204}}
> {{#12 0x00007fbb13ed7ff8 in __run_exit_handlers (status=1,
> listp=0x7fbb142625f8 <__exit_funcs>,
> run_list_atexit=run_list_atexit@entry=true) at exit.c:82}}
> {{#13 0x00007fbb13ed8045 in __GI_exit (status=<optimized out>) at
> exit.c:104}}
> {{#14 0x00007fbb12f76a7c in ?? () from
> /usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
> {{#15 0x00007fbb13391587 in ?? () from
> /usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
> {{#16 0x00007fbb1338ede7 in ?? () from
> /usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
> {{#17 0x00007fbb133900cf in ?? () from
> /usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
> {{#18 0x00007fbb133905f2 in ?? () from
> /usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
> {{#19 0x00007fbb131d6102 in ?? () from
> /usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so}}
> {{#20 0x00007fbb1386a6ba in start_thread (arg=0x7fbae3bfb700) at
> pthread_create.c:333}}
> {{#21 0x00007fbb13fa541d in clone () at
> ../sysdeps/unix/sysv/linux/x86_64/clone.S:109}}
>
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