Hei created ARROW-8586:
--------------------------
Summary: Failed to Install arrow From CRAN
Key: ARROW-8586
URL: https://issues.apache.org/jira/browse/ARROW-8586
Project: Apache Arrow
Issue Type: Bug
Components: R
Affects Versions: 0.17.0
Environment: CentOS 7
Reporter: Hei
Hi,
I am trying to install arrow via RStudio, but it seems like it is not working
that after I installed the package, it kept asking me to run
arrow::install_arrow() even after I did:
{code}
> install.packages("arrow")Installing package into
> ‘/home/hc/R/x86_64-redhat-linux-gnu-library/3.6’(as ‘lib’ is
> unspecified)trying URL
> 'https://cran.rstudio.com/src/contrib/arrow_0.17.0.tar.gz'Content type
> 'application/x-gzip' length 242534 bytes (236
> KB)==================================================downloaded 236 KB
* installing *source* package ‘arrow’ ...** package ‘arrow’ successfully
unpacked and MD5 sums checked** using staged installation*** Successfully
retrieved C++ source*** Building C++ libraries**** cmake**** arrow
./configure: line 132: cd: libarrow/arrow-0.17.0/lib: Not a
directory------------------------- NOTE ---------------------------After
installation, please run arrow::install_arrow()for help installing required
runtime libraries---------------------------------------------------------**
libsg++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c array.cpp -o array.og++ -m64
-std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c array_from_vector.cpp -o
array_from_vector.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c array_to_vector.cpp -o
array_to_vector.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c arraydata.cpp -o arraydata.og++
-m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c arrowExports.cpp -o
arrowExports.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c buffer.cpp -o buffer.og++ -m64
-std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c chunkedarray.cpp -o
chunkedarray.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c compression.cpp -o
compression.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c compute.cpp -o compute.og++
-m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c csv.cpp -o csv.og++ -m64
-std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c dataset.cpp -o dataset.og++
-m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c datatype.cpp -o datatype.og++
-m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c expression.cpp -o
expression.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c feather.cpp -o feather.og++
-m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c field.cpp -o field.og++ -m64
-std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c filesystem.cpp -o
filesystem.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c io.cpp -o io.og++ -m64
-std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c json.cpp -o json.og++ -m64
-std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c memorypool.cpp -o
memorypool.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c message.cpp -o message.og++
-m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c parquet.cpp -o parquet.og++
-m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c py-to-r.cpp -o py-to-r.og++
-m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c recordbatch.cpp -o
recordbatch.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c recordbatchreader.cpp -o
recordbatchreader.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c recordbatchwriter.cpp -o
recordbatchwriter.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c schema.cpp -o schema.og++ -m64
-std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c symbols.cpp -o symbols.og++
-m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c table.cpp -o table.og++ -m64
-std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c threadpool.cpp -o
threadpool.og++ -m64 -std=gnu++11 -shared -L/usr/lib64/R/lib -Wl,-z,relro -o
arrow.so array.o array_from_vector.o array_to_vector.o arraydata.o
arrowExports.o buffer.o chunkedarray.o compression.o compute.o csv.o dataset.o
datatype.o expression.o feather.o field.o filesystem.o io.o json.o memorypool.o
message.o parquet.o py-to-r.o recordbatch.o recordbatchreader.o
recordbatchwriter.o schema.o symbols.o table.o threadpool.o -L/usr/lib64/R/lib
-lRinstalling to
/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/00LOCK-arrow/00new/arrow/libs**
R** inst** byte-compile and prepare package for lazy loading** help***
installing help indices converting help for package ‘arrow’ finding HTML
links ... done ArrayData html
ChunkedArray html Codec
html CsvReadOptions html Rd warning:
/tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/CsvReadOptions.Rd:61: file link
‘read.csv’ in package ‘utils’ does not exist and so has been treated as a topic
CsvTableReader html DataType
html Dataset html
DictionaryType html Expression
html FeatherReader html Field
html FileFormat
html FileInfo html FileSelector
html FileSystem html
FixedWidthType html InputStream
html MemoryPool html Message
html MessageReader
html OutputStream html ParquetFileReader
html ParquetFileWriter html
ParquetReaderProperties html ParquetWriterProperties
html Partitioning html
RecordBatch html RecordBatchReader
html RecordBatchWriter html Scanner
html Schema
html Table html array
html arrow-package html
arrow_available html buffer
html cast_options html
codec_is_available html compression
html cpu_count html data-type
html dataset_factory
html default_memory_pool html dictionary
html enums html
hive_partition html install_arrow
html install_pyarrow html
make_readable_file html map_batches
html mmap_create html mmap_open
html open_dataset
html read_delim_arrow html read_feather
html read_ipc_stream html
read_json_arrow html read_message
html read_parquet html
read_record_batch html read_schema
html reexports html Rd warning:
/tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:24: file link
‘print.integer64’ in package ‘bit64’ does not exist and so has been treated as
a topicRd warning:
/tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:24: file link
‘str.integer64’ in package ‘bit64’ does not exist and so has been treated as a
topicRd warning:
/tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link
‘contains’ in package ‘tidyselect’ does not exist and so has been treated as a
topicRd warning:
/tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link
‘ends_with’ in package ‘tidyselect’ does not exist and so has been treated as a
topicRd warning:
/tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link
‘everything’ in package ‘tidyselect’ does not exist and so has been treated as
a topicRd warning:
/tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link
‘last_col’ in package ‘tidyselect’ does not exist and so has been treated as a
topicRd warning:
/tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link
‘matches’ in package ‘tidyselect’ does not exist and so has been treated as a
topicRd warning:
/tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link
‘num_range’ in package ‘tidyselect’ does not exist and so has been treated as a
topicRd warning:
/tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link
‘starts_with’ in package ‘tidyselect’ does not exist and so has been treated as
a topic type html unify_schemas
html write_feather html
write_ipc_stream html write_parquet
html write_to_raw html ** building
package indices** installing vignettes** testing if installed package can be
loaded from temporary location** checking absolute paths in shared objects and
dynamic libraries** testing if installed package can be loaded from final
location** testing if installed package keeps a record of temporary
installation path* DONE (arrow)
The downloaded source packages are in ‘/tmp/Rtmpo9otzy/downloaded_packages’>
library(arrow)
Attaching package: ‘arrow’
The following object is masked from ‘package:utils’:
timestamp
> df <- read_parquet('/home/hc/my.10.level.20200331.2book.parquet')Error in
> io___MemoryMappedFile__Open(path, mode) : Cannot call
> io___MemoryMappedFile__Open(). Please use arrow::install_arrow() to install
> required runtime libraries. > arrow::install_arrow()Installing package into
> ‘/home/hc/R/x86_64-redhat-linux-gnu-library/3.6’(as ‘lib’ is
> unspecified)trying URL
> 'https://cran.rstudio.com/src/contrib/arrow_0.17.0.tar.gz'Content type
> 'application/x-gzip' length 242534 bytes (236
> KB)==================================================downloaded 236 KB
* installing *source* package ‘arrow’ ...** package ‘arrow’ successfully
unpacked and MD5 sums checked** using staged installation*** No C++ binaries
found for centos-7.7.1908*** Successfully retrieved C++ source*** Building C++
libraries**** cmake**** arrow ./configure: line 132: cd:
libarrow/arrow-0.17.0/lib: Not a directory------------------------- NOTE
---------------------------After installation, please run
arrow::install_arrow()for help installing required runtime
libraries---------------------------------------------------------** libsg++
-m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c array.cpp -o array.og++ -m64
-std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c array_from_vector.cpp -o
array_from_vector.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c array_to_vector.cpp -o
array_to_vector.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c arraydata.cpp -o arraydata.og++
-m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c arrowExports.cpp -o
arrowExports.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c buffer.cpp -o buffer.og++ -m64
-std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c chunkedarray.cpp -o
chunkedarray.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c compression.cpp -o
compression.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c compute.cpp -o compute.og++
-m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c csv.cpp -o csv.og++ -m64
-std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c dataset.cpp -o dataset.og++
-m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c datatype.cpp -o datatype.og++
-m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c expression.cpp -o
expression.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c feather.cpp -o feather.og++
-m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c field.cpp -o field.og++ -m64
-std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c filesystem.cpp -o
filesystem.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c io.cpp -o io.og++ -m64
-std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c json.cpp -o json.og++ -m64
-std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c memorypool.cpp -o
memorypool.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c message.cpp -o message.og++
-m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c parquet.cpp -o parquet.og++
-m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c py-to-r.cpp -o py-to-r.og++
-m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c recordbatch.cpp -o
recordbatch.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c recordbatchreader.cpp -o
recordbatchreader.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c recordbatchwriter.cpp -o
recordbatchwriter.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c schema.cpp -o schema.og++ -m64
-std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c symbols.cpp -o symbols.og++
-m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c table.cpp -o table.og++ -m64
-std=gnu++11 -I"/usr/include/R" -DNDEBUG
-I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include"
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
-grecord-gcc-switches -m64 -mtune=generic -c threadpool.cpp -o
threadpool.og++ -m64 -std=gnu++11 -shared -L/usr/lib64/R/lib -Wl,-z,relro -o
arrow.so array.o array_from_vector.o array_to_vector.o arraydata.o
arrowExports.o buffer.o chunkedarray.o compression.o compute.o csv.o dataset.o
datatype.o expression.o feather.o field.o filesystem.o io.o json.o memorypool.o
message.o parquet.o py-to-r.o recordbatch.o recordbatchreader.o
recordbatchwriter.o schema.o symbols.o table.o threadpool.o -L/usr/lib64/R/lib
-lRinstalling to
/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/00LOCK-arrow/00new/arrow/libs**
R** inst** byte-compile and prepare package for lazy loading** help***
installing help indices converting help for package ‘arrow’ finding HTML
links ... done ArrayData html
ChunkedArray html Codec
html CsvReadOptions html Rd warning:
/tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/CsvReadOptions.Rd:61: file link
‘read.csv’ in package ‘utils’ does not exist and so has been treated as a topic
CsvTableReader html DataType
html Dataset html
DictionaryType html Expression
html FeatherReader html Field
html FileFormat
html FileInfo html FileSelector
html FileSystem html
FixedWidthType html InputStream
html MemoryPool html Message
html MessageReader
html OutputStream html ParquetFileReader
html ParquetFileWriter html
ParquetReaderProperties html ParquetWriterProperties
html Partitioning html
RecordBatch html RecordBatchReader
html RecordBatchWriter html Scanner
html Schema
html Table html array
html arrow-package html
arrow_available html buffer
html cast_options html
codec_is_available html compression
html cpu_count html data-type
html dataset_factory
html default_memory_pool html dictionary
html enums html
hive_partition html install_arrow
html install_pyarrow html
make_readable_file html map_batches
html mmap_create html mmap_open
html open_dataset
html read_delim_arrow html read_feather
html read_ipc_stream html
read_json_arrow html read_message
html read_parquet html
read_record_batch html read_schema
html reexports html Rd warning:
/tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:24: file link
‘print.integer64’ in package ‘bit64’ does not exist and so has been treated as
a topicRd warning:
/tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:24: file link
‘str.integer64’ in package ‘bit64’ does not exist and so has been treated as a
topicRd warning:
/tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link
‘contains’ in package ‘tidyselect’ does not exist and so has been treated as a
topicRd warning:
/tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link
‘ends_with’ in package ‘tidyselect’ does not exist and so has been treated as a
topicRd warning:
/tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link
‘everything’ in package ‘tidyselect’ does not exist and so has been treated as
a topicRd warning:
/tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link
‘last_col’ in package ‘tidyselect’ does not exist and so has been treated as a
topicRd warning:
/tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link
‘matches’ in package ‘tidyselect’ does not exist and so has been treated as a
topicRd warning:
/tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link
‘num_range’ in package ‘tidyselect’ does not exist and so has been treated as a
topicRd warning:
/tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link
‘starts_with’ in package ‘tidyselect’ does not exist and so has been treated as
a topic type html unify_schemas
html write_feather html
write_ipc_stream html write_parquet
html write_to_raw html ** building
package indices** installing vignettes** testing if installed package can be
loaded from temporary location** checking absolute paths in shared objects and
dynamic libraries** testing if installed package can be loaded from final
location** testing if installed package keeps a record of temporary
installation path* DONE (arrow)
The downloaded source packages are in
‘/tmp/Rtmpo9otzy/downloaded_packages’Please restart R to use the 'arrow'
package.
Restarting R session...
> library(arrow)
Attaching package: ‘arrow’
The following object is masked from ‘package:utils’:
timestamp
> read_parquet('/home/hc/my.10.level.20200331.1.book.parquet')Error in
> io___MemoryMappedFile__Open(path, mode) : Cannot call
> io___MemoryMappedFile__Open(). Please use arrow::install_arrow() to install
> required runtime libraries. > library(arrow)> df <-
> read_parquet('/home/hc/my.10.level.20200331.1.book.parquet')Error in
> io___MemoryMappedFile__Open(path, mode) : Cannot call
> io___MemoryMappedFile__Open(). Please use arrow::install_arrow() to install
> required runtime libraries.
{code}
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