[
https://issues.apache.org/jira/browse/ARROW-8556?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17091925#comment-17091925
]
Karl Dunkle Werner commented on ARROW-8556:
-------------------------------------------
{noformat}
Installing package into ‘/home/karl/test_arrow’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
trying URL 'https://cloud.r-project.org/src/contrib/arrow_0.17.0.tar.gz'
Content type 'application/x-gzip' length 242534 bytes (236 KB)
==================================================
downloaded 236 KB* installing *source* package ‘arrow’ ...
** package ‘arrow’ successfully unpacked and MD5 sums checked
** using staged installation
*** Generating code with data-raw/codegen.R
Fatal error: cannot open file 'data-raw/codegen.R': No such file or directory
trying URL
'https://dl.bintray.com/ursalabs/arrow-r/libarrow/src/arrow-0.17.0.zip'
Error in download.file(from_url, to_file, quiet = quietly) :
cannot open URL
'https://dl.bintray.com/ursalabs/arrow-r/libarrow/src/arrow-0.17.0.zip'
trying URL
'https://www.apache.org/dyn/closer.lua?action=download&filename=arrow/arrow-0.17.0/apache-arrow-0.17.0.tar.gz'
Content type 'application/x-gzip' length 6460548 bytes (6.2 MB)
==================================================
downloaded 6.2 MB*** Successfully retrieved C++ source
*** Building C++ libraries
rm: cannot remove 'src/*.o': No such file or directory
*** Building with MAKEFLAGS= -j4
**** arrow with
SOURCE_DIR=/tmp/RtmptP2CaW/file476e274f73a4/apache-arrow-0.17.0/cpp
BUILD_DIR=/tmp/RtmptP2CaW/file476e6fba345b DEST_DIR=libarrow/arrow-0.17.0
CMAKE=/usr/bin/cmake
++ pwd
+ : /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow
+ : /tmp/RtmptP2CaW/file476e274f73a4/apache-arrow-0.17.0/cpp
+ : /tmp/RtmptP2CaW/file476e6fba345b
+ : libarrow/arrow-0.17.0
+ : /usr/bin/cmake
++ cd /tmp/RtmptP2CaW/file476e274f73a4/apache-arrow-0.17.0/cpp
++ pwd
+ SOURCE_DIR=/tmp/RtmptP2CaW/file476e274f73a4/apache-arrow-0.17.0/cpp
++ mkdir -p libarrow/arrow-0.17.0
++ cd libarrow/arrow-0.17.0
++ pwd
+ DEST_DIR=/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0
+ '[' '' = '' ']'
+ which ninja
+ CMAKE_GENERATOR=Ninja
+ '[' false = false ']'
+ ARROW_JEMALLOC=ON
+ ARROW_WITH_BROTLI=ON
+ ARROW_WITH_BZ2=ON
+ ARROW_WITH_LZ4=ON
+ ARROW_WITH_SNAPPY=ON
+ ARROW_WITH_ZLIB=ON
+ ARROW_WITH_ZSTD=ON
+ mkdir -p /tmp/RtmptP2CaW/file476e6fba345b
+ pushd /tmp/RtmptP2CaW/file476e6fba345b
/tmp/RtmptP2CaW/file476e6fba345b /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow
+ /usr/bin/cmake -DARROW_BOOST_USE_SHARED=OFF -DARROW_BUILD_TESTS=OFF
-DARROW_BUILD_SHARED=OFF -DARROW_BUILD_STATIC=ON -DARROW_COMPUTE=ON
-DARROW_CSV=ON -DARROW_DATASET=ON -DARROW_DEPENDENCY_SOURCE=AUTO
-DARROW_FILESYSTEM=ON -DARROW_JEMALLOC=ON -DARROW_JSON=ON -DARROW_PARQUET=ON
-DARROW_WITH_BROTLI=ON -DARROW_WITH_BZ2=ON -DARROW_WITH_LZ4=ON
-DARROW_WITH_SNAPPY=ON -DARROW_WITH_ZLIB=ON -DARROW_WITH_ZSTD=ON
-DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_LIBDIR=lib
-DCMAKE_INSTALL_PREFIX=/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0
-DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON
-DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_UNITY_BUILD=ON
-DOPENSSL_USE_STATIC_LIBS=ON -G Ninja
/tmp/RtmptP2CaW/file476e274f73a4/apache-arrow-0.17.0/cpp
-- Building using CMake version: 3.13.4
-- The C compiler identification is GNU 9.2.1
-- The CXX compiler identification is GNU 9.2.1
-- Check for working C compiler: /usr/lib/ccache/cc
-- Check for working C compiler: /usr/lib/ccache/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/lib/ccache/c++
-- Check for working CXX compiler: /usr/lib/ccache/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Arrow version: 0.17.0 (full: '0.17.0')
-- Arrow SO version: 17 (full: 17.0.0)
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1")
-- clang-tidy not found
-- clang-format not found
-- Could NOT find ClangTools (missing: CLANG_FORMAT_BIN CLANG_TIDY_BIN)
-- infer not found
-- Found Python3: /usr/bin/python3.7 (found version "3.7.5") found components:
Interpreter
-- Using ccache: /usr/bin/ccache
-- Found cpplint executable at
/tmp/RtmptP2CaW/file476e274f73a4/apache-arrow-0.17.0/cpp/build-support/cpplint.py
-- System processor: x86_64
-- Performing Test CXX_SUPPORTS_SSE4_2
-- Performing Test CXX_SUPPORTS_SSE4_2 - Success
-- Performing Test CXX_SUPPORTS_AVX2
-- Performing Test CXX_SUPPORTS_AVX2 - Success
-- Performing Test CXX_SUPPORTS_AVX512
-- Performing Test CXX_SUPPORTS_AVX512 - Success
-- Arrow build warning level: PRODUCTION
Using ld linker
Configured for RELEASE build (set with cmake
-DCMAKE_BUILD_TYPE={release,debug,...})
-- Build Type: RELEASE
-- Using AUTO approach to find dependencies
-- ARROW_AWSSDK_BUILD_VERSION: 1.7.160
-- ARROW_BOOST_BUILD_VERSION: 1.71.0
-- ARROW_BROTLI_BUILD_VERSION: v1.0.7
-- ARROW_BZIP2_BUILD_VERSION: 1.0.8
-- ARROW_CARES_BUILD_VERSION: 1.15.0
-- ARROW_GBENCHMARK_BUILD_VERSION: v1.5.0
-- ARROW_GFLAGS_BUILD_VERSION: v2.2.0
-- ARROW_GLOG_BUILD_VERSION: v0.3.5
-- ARROW_GRPC_BUILD_VERSION: v1.25.0
-- ARROW_GTEST_BUILD_VERSION: 1.8.1
-- ARROW_JEMALLOC_BUILD_VERSION: 5.2.1
-- ARROW_LZ4_BUILD_VERSION: v1.9.2
-- ARROW_MIMALLOC_BUILD_VERSION: 270e765454f98e8bab9d42609b153425f749fff6
-- ARROW_ORC_BUILD_VERSION: 1.6.2
-- ARROW_PROTOBUF_BUILD_VERSION: v3.7.1
-- ARROW_RAPIDJSON_BUILD_VERSION: 2bbd33b33217ff4a73434ebf10cdac41e2ef5e34
-- ARROW_RE2_BUILD_VERSION: 2019-08-01
-- ARROW_SNAPPY_BUILD_VERSION: 1.1.7
-- ARROW_THRIFT_BUILD_VERSION: 0.12.0
-- ARROW_THRIFT_BUILD_MD5_CHECKSUM: 3deebbb4d1ca77dd9c9e009a1ea02183
-- ARROW_ZLIB_BUILD_VERSION: 1.2.11
-- ARROW_ZSTD_BUILD_VERSION: v1.4.3
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Check if compiler accepts -pthread
-- Check if compiler accepts -pthread - yes
-- Found Threads: TRUE
-- Checking for module 'thrift'
-- No package 'thrift' found
-- Could NOT find Thrift: Found unsuitable version "", but required is at least
"0.11.0" (found THRIFT_STATIC_LIB-NOTFOUND)
-- Boost version: 1.67.0
-- Found the following Boost libraries:
-- regex
-- system
-- filesystem
-- Boost include dir: /usr/include
-- Boost libraries: Boost::system;Boost::filesystem
-- Could NOT find SnappyAlt (missing: Snappy_LIB Snappy_INCLUDE_DIR)
-- Building snappy from source
-- Checking for modules 'libbrotlicommon;libbrotlienc;libbrotlidec'
-- No package 'libbrotlicommon' found
-- No package 'libbrotlienc' found
-- No package 'libbrotlidec' found
-- Could NOT find Brotli (missing: BROTLI_COMMON_LIBRARY BROTLI_ENC_LIBRARY
BROTLI_DEC_LIBRARY BROTLI_INCLUDE_DIR)
-- Building brotli from source
-- Building without OpenSSL support. Minimum OpenSSL version 1.0.2 required.
Building Apache Thrift from source
-- Building (vendored) jemalloc from source
-- Could NOT find RapidJSONAlt (missing: RAPIDJSON_INCLUDE_DIR) (Required is at
least version "1.1.0")
-- Building rapidjson from source
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11")
-- Checking for module 'liblz4'
-- No package 'liblz4' found
-- Could NOT find Lz4 (missing: LZ4_LIB LZ4_INCLUDE_DIR)
-- Building lz4 from source
-- Checking for module 'libzstd'
-- Found libzstd, version 1.4.3
-- Found ZSTD: /usr/lib/x86_64-linux-gnu/libzstd.so
-- Found BZip2: /usr/lib/x86_64-linux-gnu/libbz2.so (found version "1.0.6")
-- Looking for BZ2_bzCompressInit
-- Looking for BZ2_bzCompressInit - found
-- Found hdfs.h at:
/tmp/RtmptP2CaW/file476e274f73a4/apache-arrow-0.17.0/cpp/thirdparty/hadoop/include/hdfs.h
-- CMAKE_C_FLAGS: -O3 -DNDEBUG -Wall -msse4.2
-- CMAKE_CXX_FLAGS: -Wno-noexcept-type -Wno-subobject-linkage
-fdiagnostics-color=always -O3 -DNDEBUG -Wall -msse4.2
-- Looking for backtrace
-- Looking for backtrace - found
-- backtrace facility detected in default set of libraries
-- Found Backtrace: /usr/include
-- ---------------------------------------------------------------------
-- Arrow version: 0.17.0
--
-- Build configuration summary:
-- Generator: Ninja
-- Build type: RELEASE
-- Source directory: /tmp/RtmptP2CaW/file476e274f73a4/apache-arrow-0.17.0/cpp
-- Install prefix:
/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0
--
-- Compile and link options:
--
-- ARROW_CXXFLAGS="" [default=""]
-- Compiler flags to append when compiling Arrow
-- ARROW_BUILD_STATIC=ON [default=ON]
-- Build static libraries
-- ARROW_BUILD_SHARED=OFF [default=ON]
-- Build shared libraries
-- ARROW_NO_DEPRECATED_API=OFF [default=OFF]
-- Exclude deprecated APIs from build
-- ARROW_USE_CCACHE=ON [default=ON]
-- Use ccache when compiling (if available)
-- ARROW_USE_LD_GOLD=OFF [default=OFF]
-- Use ld.gold for linking on Linux (if available)
-- ARROW_USE_PRECOMPILED_HEADERS=OFF [default=OFF]
-- Use precompiled headers when compiling
-- ARROW_USE_SIMD=ON [default=ON]
-- Build with SIMD optimizations
-- ARROW_SIMD_LEVEL=SSE4_2 [default=NONE|SSE4_2|AVX2|AVX512]
-- SIMD compiler optimization level
-- ARROW_ARMV8_ARCH=armv8-a [default=armv8-a|armv8-a+crc+crypto]
-- Arm64 arch and extensions
-- ARROW_ALTIVEC=ON [default=ON]
-- Build with Altivec if compiler has support
-- ARROW_RPATH_ORIGIN=OFF [default=OFF]
-- Build Arrow libraries with RATH set to $ORIGIN
-- ARROW_INSTALL_NAME_RPATH=ON [default=ON]
-- Build Arrow libraries with install_name set to @rpath
-- ARROW_GGDB_DEBUG=ON [default=ON]
-- Pass -ggdb flag to debug builds
--
-- Test and benchmark options:
--
-- ARROW_BUILD_EXAMPLES=OFF [default=OFF]
-- Build the Arrow examples
-- ARROW_BUILD_TESTS=OFF [default=OFF]
-- Build the Arrow googletest unit tests
-- ARROW_ENABLE_TIMING_TESTS=ON [default=ON]
-- Enable timing-sensitive tests
-- ARROW_BUILD_INTEGRATION=OFF [default=OFF]
-- Build the Arrow integration test executables
-- ARROW_BUILD_BENCHMARKS=OFF [default=OFF]
-- Build the Arrow micro benchmarks
-- ARROW_BUILD_BENCHMARKS_REFERENCE=OFF [default=OFF]
-- Build the Arrow micro reference benchmarks
-- ARROW_TEST_LINKAGE=static [default=shared|static]
-- Linkage of Arrow libraries with unit tests executables.
-- ARROW_FUZZING=OFF [default=OFF]
-- Build Arrow Fuzzing executables
-- ARROW_LARGE_MEMORY_TESTS=OFF [default=OFF]
-- Enable unit tests which use large memory
--
-- Lint options:
--
-- ARROW_ONLY_LINT=OFF [default=OFF]
-- Only define the lint and check-format targets
-- ARROW_VERBOSE_LINT=OFF [default=OFF]
-- If off, 'quiet' flags will be passed to linting tools
-- ARROW_GENERATE_COVERAGE=OFF [default=OFF]
-- Build with C++ code coverage enabled
--
-- Checks options:
--
-- ARROW_TEST_MEMCHECK=OFF [default=OFF]
-- Run the test suite using valgrind --tool=memcheck
-- ARROW_USE_ASAN=OFF [default=OFF]
-- Enable Address Sanitizer checks
-- ARROW_USE_TSAN=OFF [default=OFF]
-- Enable Thread Sanitizer checks
-- ARROW_USE_UBSAN=OFF [default=OFF]
-- Enable Undefined Behavior sanitizer checks
--
-- Project component options:
--
-- ARROW_BUILD_UTILITIES=OFF [default=OFF]
-- Build Arrow commandline utilities
-- ARROW_COMPUTE=ON [default=OFF]
-- Build the Arrow Compute Modules
-- ARROW_CSV=ON [default=OFF]
-- Build the Arrow CSV Parser Module
-- ARROW_CUDA=OFF [default=OFF]
-- Build the Arrow CUDA extensions (requires CUDA toolkit)
-- ARROW_DATASET=ON [default=OFF]
-- Build the Arrow Dataset Modules
-- ARROW_FILESYSTEM=ON [default=OFF]
-- Build the Arrow Filesystem Layer
-- ARROW_FLIGHT=OFF [default=OFF]
-- Build the Arrow Flight RPC System (requires GRPC, Protocol Buffers)
-- ARROW_GANDIVA=OFF [default=OFF]
-- Build the Gandiva libraries
-- ARROW_HDFS=OFF [default=OFF]
-- Build the Arrow HDFS bridge
-- ARROW_HIVESERVER2=OFF [default=OFF]
-- Build the HiveServer2 client and Arrow adapter
-- ARROW_IPC=ON [default=ON]
-- Build the Arrow IPC extensions
-- ARROW_JEMALLOC=ON [default=ON]
-- Build the Arrow jemalloc-based allocator
-- ARROW_JNI=OFF [default=OFF]
-- Build the Arrow JNI lib
-- ARROW_JSON=ON [default=OFF]
-- Build Arrow with JSON support (requires RapidJSON)
-- ARROW_MIMALLOC=OFF [default=OFF]
-- Build the Arrow mimalloc-based allocator
-- ARROW_PARQUET=ON [default=OFF]
-- Build the Parquet libraries
-- ARROW_ORC=OFF [default=OFF]
-- Build the Arrow ORC adapter
-- ARROW_PLASMA=OFF [default=OFF]
-- Build the plasma object store along with Arrow
-- ARROW_PLASMA_JAVA_CLIENT=OFF [default=OFF]
-- Build the plasma object store java client
-- ARROW_PYTHON=OFF [default=OFF]
-- Build the Arrow CPython extensions
-- ARROW_S3=OFF [default=OFF]
-- Build Arrow with S3 support (requires the AWS SDK for C++)
-- ARROW_TENSORFLOW=OFF [default=OFF]
-- Build Arrow with TensorFlow support enabled
--
-- Thirdparty toolchain options:
--
-- ARROW_DEPENDENCY_SOURCE=AUTO [default=AUTO|BUNDLED|SYSTEM|CONDA|BREW]
-- Method to use for acquiring arrow's build dependencies
-- ARROW_VERBOSE_THIRDPARTY_BUILD=OFF [default=OFF]
-- Show output from ExternalProjects rather than just logging to files
-- ARROW_BOOST_USE_SHARED=OFF [default=ON]
-- Rely on boost shared libraries where relevant
-- ARROW_PROTOBUF_USE_SHARED=ON [default=ON]
-- Rely on Protocol Buffers shared libraries where relevant
-- ARROW_GFLAGS_USE_SHARED=ON [default=ON]
-- Rely on GFlags shared libraries where relevant
-- ARROW_WITH_BACKTRACE=ON [default=ON]
-- Build with backtrace support
-- ARROW_USE_GLOG=OFF [default=OFF]
-- Build libraries with glog support for pluggable logging
-- ARROW_WITH_BROTLI=ON [default=OFF]
-- Build with Brotli compression
-- ARROW_WITH_BZ2=ON [default=OFF]
-- Build with BZ2 compression
-- ARROW_WITH_LZ4=ON [default=OFF]
-- Build with lz4 compression
-- ARROW_WITH_SNAPPY=ON [default=OFF]
-- Build with Snappy compression
-- ARROW_WITH_ZLIB=ON [default=OFF]
-- Build with zlib compression
-- ARROW_WITH_ZSTD=ON [default=OFF]
-- Build with zstd compression
--
-- Parquet options:
--
-- PARQUET_MINIMAL_DEPENDENCY=OFF [default=OFF]
-- Depend only on Thirdparty headers to build libparquet.
-- Always OFF if building binaries
-- PARQUET_BUILD_EXECUTABLES=OFF [default=OFF]
-- Build the Parquet executable CLI tools. Requires static libraries to
be built.
-- PARQUET_BUILD_EXAMPLES=OFF [default=OFF]
-- Build the Parquet examples. Requires static libraries to be built.
-- PARQUET_REQUIRE_ENCRYPTION=OFF [default=OFF]
-- Build support for encryption. Fail if OpenSSL is not found
--
-- Gandiva options:
--
-- ARROW_GANDIVA_JAVA=OFF [default=OFF]
-- Build the Gandiva JNI wrappers
-- ARROW_GANDIVA_STATIC_LIBSTDCPP=OFF [default=OFF]
-- Include -static-libstdc++ -static-libgcc when linking with
-- Gandiva static libraries
-- ARROW_GANDIVA_PC_CXX_FLAGS="" [default=""]
-- Compiler flags to append when pre-compiling Gandiva operations
--
-- Advanced developer options:
--
-- ARROW_EXTRA_ERROR_CONTEXT=OFF [default=OFF]
-- Compile with extra error context (line numbers, code)
-- ARROW_OPTIONAL_INSTALL=OFF [default=OFF]
-- If enabled install ONLY targets that have already been built. Please be
-- advised that if this is enabled 'install' will fail silently on
components
-- that have not been built
-- Outputting build configuration summary to
/tmp/RtmptP2CaW/file476e6fba345b/cmake_summary.json
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
OPENSSL_USE_STATIC_LIBS
-- Build files have been written to: /tmp/RtmptP2CaW/file476e6fba345b
+ /usr/bin/cmake --build . --target install
[7/241] Performing download step (download, verify and extract) for
'rapidjson_ep'
-- rapidjson_ep download command succeeded. See also
/tmp/RtmptP2CaW/file476e6fba345b/src/rapidjson_ep-stamp/rapidjson_ep-download-*.log
[10/241] Performing download step (download, verify and extract) for 'lz4_ep'
-- lz4_ep download command succeeded. See also
/tmp/RtmptP2CaW/file476e6fba345b/lz4_ep-prefix/src/lz4_ep-stamp/lz4_ep-download-*.log
[14/241] Performing download step (download, verify and extract) for
'jemalloc_ep'
-- jemalloc_ep download command succeeded. See also
/tmp/RtmptP2CaW/file476e6fba345b/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-download-*.log
[17/241] Performing download step (download, verify and extract) for 'snappy_ep'
-- snappy_ep download command succeeded. See also
/tmp/RtmptP2CaW/file476e6fba345b/snappy_ep-prefix/src/snappy_ep-stamp/snappy_ep-download-*.log
[20/241] Performing configure step for 'rapidjson_ep'
-- rapidjson_ep configure command succeeded. See also
/tmp/RtmptP2CaW/file476e6fba345b/src/rapidjson_ep-stamp/rapidjson_ep-configure-*.log
[21/241] Performing build step for 'rapidjson_ep'
-- rapidjson_ep build command succeeded. See also
/tmp/RtmptP2CaW/file476e6fba345b/src/rapidjson_ep-stamp/rapidjson_ep-build-*.log
[22/241] Performing install step for 'rapidjson_ep'
-- rapidjson_ep install command succeeded. See also
/tmp/RtmptP2CaW/file476e6fba345b/src/rapidjson_ep-stamp/rapidjson_ep-install-*.log
[24/241] Performing download step (download, verify and extract) for 'thrift_ep'
-- thrift_ep download command succeeded. See also
/tmp/RtmptP2CaW/file476e6fba345b/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-download-*.log
[31/241] Performing download step (download, verify and extract) for 'brotli_ep'
-- brotli_ep download command succeeded. See also
/tmp/RtmptP2CaW/file476e6fba345b/brotli_ep-prefix/src/brotli_ep-stamp/brotli_ep-download-*.log
[34/241] Performing configure step for 'snappy_ep'
-- snappy_ep configure command succeeded. See also
/tmp/RtmptP2CaW/file476e6fba345b/snappy_ep-prefix/src/snappy_ep-stamp/snappy_ep-configure-*.log
[35/241] Performing build step for 'snappy_ep'
-- snappy_ep build command succeeded. See also
/tmp/RtmptP2CaW/file476e6fba345b/snappy_ep-prefix/src/snappy_ep-stamp/snappy_ep-build-*.log
[36/241] Performing install step for 'snappy_ep'
-- snappy_ep install command succeeded. See also
/tmp/RtmptP2CaW/file476e6fba345b/snappy_ep-prefix/src/snappy_ep-stamp/snappy_ep-install-*.log
[38/241] Performing configure step for 'brotli_ep'
-- brotli_ep configure command succeeded. See also
/tmp/RtmptP2CaW/file476e6fba345b/brotli_ep-prefix/src/brotli_ep-stamp/brotli_ep-configure-*.log
[41/241] Performing configure step for 'thrift_ep'
-- thrift_ep configure command succeeded. See also
/tmp/RtmptP2CaW/file476e6fba345b/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-configure-*.log
[45/241] Performing build step for 'lz4_ep'
-- lz4_ep build command succeeded. See also
/tmp/RtmptP2CaW/file476e6fba345b/lz4_ep-prefix/src/lz4_ep-stamp/lz4_ep-build-*.log
[48/241] Performing build step for 'brotli_ep'
-- brotli_ep build command succeeded. See also
/tmp/RtmptP2CaW/file476e6fba345b/brotli_ep-prefix/src/brotli_ep-stamp/brotli_ep-build-*.log
[49/241] Performing install step for 'brotli_ep'
-- brotli_ep install command succeeded. See also
/tmp/RtmptP2CaW/file476e6fba345b/brotli_ep-prefix/src/brotli_ep-stamp/brotli_ep-install-*.log
[51/241] Performing configure step for 'jemalloc_ep'
-- jemalloc_ep configure command succeeded. See also
/tmp/RtmptP2CaW/file476e6fba345b/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-configure-*.log
[52/241] Performing build step for 'thrift_ep'
-- thrift_ep build command succeeded. See also
/tmp/RtmptP2CaW/file476e6fba345b/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-build-*.log
[53/241] Performing install step for 'thrift_ep'
-- thrift_ep install command succeeded. See also
/tmp/RtmptP2CaW/file476e6fba345b/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-install-*.log
[55/241] Performing build step for 'jemalloc_ep'
-- jemalloc_ep build command succeeded. See also
/tmp/RtmptP2CaW/file476e6fba345b/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-build-*.log
[56/241] Performing install step for 'jemalloc_ep'
-- jemalloc_ep install command succeeded. See also
/tmp/RtmptP2CaW/file476e6fba345b/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-install-*.log
[84/241] Building CXX object src/arrow/CMakeFiles/arrow_objlib.dir/scalar.cc.o
In file included from
/tmp/RtmptP2CaW/file476e274f73a4/apache-arrow-0.17.0/cpp/src/arrow/scalar.cc:34:
/tmp/RtmptP2CaW/file476e274f73a4/apache-arrow-0.17.0/cpp/src/arrow/util/time.h:35:45:
warning: ‘arrow::util::kTimestampConversionTable’ defined but not used
[-Wunused-variable]
35 | static std::pair<DivideOrMultiply, int64_t>
kTimestampConversionTable[4][4] = {
| ^~~~~~~~~~~~~~~~~~~~~~~~~
[240/241] Install the project...
-- Install configuration: "RELEASE"
-- Installing:
/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/util/config.h
-- Installing:
/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/share/doc/arrow/LICENSE.txt
-- Installing:
/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/share/doc/arrow/NOTICE.txt
-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/ipc/test_common.h
-- Installing:
/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/ipc/util.h
-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
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-- Installing:
/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/test_encryption_util.h
-- Installing:
/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/test_util.h
-- Installing:
/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/types.h
-- Installing:
/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/windows_compatibility.h
-- Installing:
/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/parquet_version.h
-- Installing:
/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/api/io.h
-- Installing:
/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/api/reader.h
-- Installing:
/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/api/schema.h
-- Installing:
/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/api/writer.h
-- Installing:
/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/arrow/reader.h
-- Installing:
/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/arrow/schema.h
-- Installing:
/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/arrow/test_util.h
-- Installing:
/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/arrow/writer.h
+ '[' 0 -ne 0 ']'
+ find . -regex '.*/.*/lib/.*\.a$'
+ xargs '-I{}' cp -u '{}'
/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib
+ rm
/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib/libjemalloc.a
+ '[' -f
/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib/libbrotlicommon-static.a
']'
+ mv
/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib/libbrotlicommon-static.a
/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib/libbrotlizzz-static.a
+ popd
/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow
PKG_CFLAGS=-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW
PKG_LIBS=-L/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib
-larrow_dataset -lparquet -larrow -larrow -larrow_dataset -lbrotlidec-static
-lbrotlienc-static -lbrotlizzz-static -ljemalloc_pic -llz4 -lparquet -lsnappy
-lthrift -lthriftz
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
array.cpp -o array.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
array_from_vector.cpp -o array_from_vector.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
array_to_vector.cpp -o array_to_vector.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
arraydata.cpp -o arraydata.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
arrowExports.cpp -o arrowExports.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
buffer.cpp -o buffer.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
chunkedarray.cpp -o chunkedarray.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
compression.cpp -o compression.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
compute.cpp -o compute.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c csv.cpp
-o csv.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
dataset.cpp -o dataset.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
datatype.cpp -o datatype.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
expression.cpp -o expression.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
feather.cpp -o feather.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
field.cpp -o field.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
filesystem.cpp -o filesystem.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io.cpp
-o io.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
json.cpp -o json.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
memorypool.cpp -o memorypool.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
message.cpp -o message.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
parquet.cpp -o parquet.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
py-to-r.cpp -o py-to-r.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
recordbatch.cpp -o recordbatch.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
recordbatchreader.cpp -o recordbatchreader.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
recordbatchwriter.cpp -o recordbatchwriter.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
schema.cpp -o schema.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
symbols.cpp -o symbols.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
table.cpp -o table.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include
-DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
threadpool.cpp -o threadpool.o
g++ -std=gnu++11 -Wl,--strip-debug -shared -L/usr/lib/R/lib
-Wl,-Bsymbolic-functions -Wl,-z,relro -o arrow.so array.o array_from_vector.o
array_to_vector.o arraydata.o arrowExports.o buffer.o chunkedarray.o
compression.o compute.o csv.o dataset.o datatype.o expression.o feather.o
field.o filesystem.o io.o json.o memorypool.o message.o parquet.o py-to-r.o
recordbatch.o recordbatchreader.o recordbatchwriter.o schema.o symbols.o
table.o threadpool.o
-L/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib
-larrow_dataset -lparquet -larrow -larrow -larrow_dataset -lbrotlidec-static
-lbrotlienc-static -lbrotlizzz-static -ljemalloc_pic -llz4 -lparquet -lsnappy
-lthrift -lthriftz -L/usr/lib/R/lib -lR
installing to /home/karl/test_arrow/00LOCK-arrow/00new/arrow/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘arrow’ in dyn.load(file, DLLpath =
DLLpath, ...):
unable to load shared object
'/home/karl/test_arrow/00LOCK-arrow/00new/arrow/libs/arrow.so':
/home/karl/test_arrow/00LOCK-arrow/00new/arrow/libs/arrow.so: undefined
symbol: ZSTD_initCStream
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/home/karl/test_arrow/arrow’The downloaded source packages are in
‘/tmp/RtmprbZTya/downloaded_packages’
Warning message:
In install.packages("arrow") :
installation of package ‘arrow’ had non-zero exit status
{noformat}
> [R] zstd symbol not found on Ubuntu 19.10
> -----------------------------------------
>
> Key: ARROW-8556
> URL: https://issues.apache.org/jira/browse/ARROW-8556
> Project: Apache Arrow
> Issue Type: Bug
> Components: R
> Affects Versions: 0.17.0
> Environment: Ubuntu 19.10
> R 3.6.1
> Reporter: Karl Dunkle Werner
> Priority: Major
>
> I would like to install the `arrow` R package on my Ubuntu 19.10 system.
> Prebuilt binaries are unavailable, and I want to enable compression, so I set
> the {{LIBARROW_MINIMAL=false}} environment variable. When I do so, it looks
> like the package is able to compile, but can't be loaded. I'm able to install
> correctly if I don't set the {{LIBARROW_MINIMAL}} variable.
> Here's the error I get:
> {code:java}
> ** testing if installed package can be loaded from temporary location
> Error: package or namespace load failed for ‘arrow’ in dyn.load(file, DLLpath
> = DLLpath, ...):
> unable to load shared object
> '~/.R/3.6/00LOCK-arrow/00new/arrow/libs/arrow.so':
> ~/.R/3.6/00LOCK-arrow/00new/arrow/libs/arrow.so: undefined symbol:
> ZSTD_initCStream
> Error: loading failed
> Execution halted
> ERROR: loading failed
> * removing ‘~/.R/3.6/arrow’
> {code}
>
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