Ofek Shilon created ARROW-9932: ---------------------------------- Summary: R package fails to install on Ubuntu 14 Key: ARROW-9932 URL: https://issues.apache.org/jira/browse/ARROW-9932 Project: Apache Arrow Issue Type: Bug Components: R Affects Versions: 1.0.1 Environment: R version 3.4.0 (2015-04-16) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 14.04.5 LTS Reporter: Ofek Shilon
1. From R (3.4) prompt, we run {{> install.packages("arrow")}} and it seems to succeed. 2. Next we run: {{> arrow::install_arrow()}} This is the full output: {{Installing package into '/opt/R-3.4.0.mkl/library'}} {{(as 'lib' is unspecified)}} {{trying URL 'https://cloud.r-project.org/src/contrib/arrow_1.0.1.tar.gz'}} {{Content type 'application/x-gzip' length 274865 bytes (268 KB)}} {{==================================================}} {{downloaded 268 KBinstalling *source* package 'arrow' ...}} {{** package 'arrow' successfully unpacked and MD5 sums checked}} {{*** No C++ binaries found for ubuntu-14.04}} {{*** Successfully retrieved C++ source}} {{*** Building C++ libraries}} {{**** cmake}} {{Error in dQuote(env_var_list, FALSE) : unused argument (FALSE)}} {{Calls: build_libarrow -> paste}} {{Execution halted}} {{------------------------- NOTE ---------------------------}} {{After installation, please run arrow::install_arrow()}} {{for help installing required runtime libraries}} {{---------------------------------------------------------}} {{** libs}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c array.cpp -o array.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c array_from_vector.cpp -o array_from_vector.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c array_to_vector.cpp -o array_to_vector.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c arraydata.cpp -o arraydata.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c arrowExports.cpp -o arrowExports.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c buffer.cpp -o buffer.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c chunkedarray.cpp -o chunkedarray.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c compression.cpp -o compression.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c compute.cpp -o compute.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c csv.cpp -o csv.o}}{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c dataset.cpp -o dataset.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c datatype.cpp -o datatype.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c expression.cpp -o expression.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c feather.cpp -o feather.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c field.cpp -o field.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c filesystem.cpp -o filesystem.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c imports.cpp -o imports.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c io.cpp -o io.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c json.cpp -o json.o}}{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c memorypool.cpp -o memorypool.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c message.cpp -o message.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c parquet.cpp -o parquet.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c py-to-r.cpp -o py-to-r.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c recordbatch.cpp -o recordbatch.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c recordbatchreader.cpp -o recordbatchreader.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c recordbatchwriter.cpp -o recordbatchwriter.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c scalar.cpp -o scalar.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c schema.cpp -o schema.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c symbols.cpp -o symbols.o}} {{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c table.cpp -o table.o}}{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c threadpool.cpp -o threadpool.o}}{{g++ -std=gnu++0x -shared -L/opt/R-3.4.0.mkl/lib64/R/lib -L/usr/local/lib64 -o arrow.so array.o array_from_vector.o array_to_vector.o arraydata.o arrowExports.o buffer.o chunkedarray.o compression.o compute.o csv.o dataset.o datatype.o expression.o feather.o field.o filesystem.o imports.o io.o json.o memorypool.o message.o parquet.o py-to-r.o recordbatch.o recordbatchreader.o recordbatchwriter.o scalar.o schema.o symbols.o table.o threadpool.o -L/opt/R-3.4.0.mkl/lib64/R/lib -lR}} {{installing to /opt/R-3.4.0.mkl/library/arrow/libs}}{{** R}} {{** inst}} {{** preparing package for lazy loading}} {{** help}} {{*** installing help indices}} {{** building package indices}} {{** installing vignettes}}{{** testing if installed package can be loaded}} {{* DONE (arrow)}}{{The downloaded source packages are inThe downloaded source packages are in '/tmp/RtmppBCBzR/downloaded_packages'}}{{Please restart R to use the 'arrow' package.}} 3. We restart R, and run - {{> arrow::arrow_available()}} {{*[1] FALSE*}} And indeed all arrow functionality fails. > x <- arrow::Table$create(data.frame(a=1:2)) Error in Table__from_dots(dots, > schema) : Cannot call Table__from_dots(). Please use arrow::install_arrow() to install required runtime libraries. -- This message was sent by Atlassian Jira (v8.3.4#803005)