Shane Brennan created ARROW-17374:
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Summary: R Arrow install fails with SNAPPY_LIB-NOTFOUND
Key: ARROW-17374
URL: https://issues.apache.org/jira/browse/ARROW-17374
Project: Apache Arrow
Issue Type: Bug
Components: R
Affects Versions: 8.0.1, 9.0.0, 8.0.0
Environment: Amazon Linux 2 (RHEL) - 5.10.102-99.473.amzn2.x86_64
Reporter: Shane Brennan
I've been trying to install Arrow on an R notebook within AWS SageMaker.
SageMaker provides Jupyter-like notebooks, with each instance running Amazon
Linux 2 as its OS, itself based on RHEL.
Trying to install a few ways, e.g., using the standard binaries, using the
nightly builds, setting ARROW_WITH_SNAPPY to ON and LIBARROW_MINIMAL all still
result in the following error.
{noformat}
x86_64-conda-linux-gnu-c++ -std=gnu++11 -shared
-L/home/ec2-user/anaconda3/envs/R/lib/R/lib -Wl,-O2 -Wl,--sort-common
-Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags
-Wl,--gc-sections -Wl,--allow-shlib-undefined
-Wl,-rpath,/home/ec2-user/anaconda3/envs/R/lib
-Wl,-rpath-link,/home/ec2-user/anaconda3/envs/R/lib
-L/home/ec2-user/anaconda3/envs/R/lib -o arrow.so RTasks.o altrep.o array.o
array_to_vector.o arraydata.o arrowExports.o bridge.o buffer.o chunkedarray.o
compression.o compute-exec.o compute.o config.o csv.o dataset.o datatype.o
expression.o extension-impl.o feather.o field.o filesystem.o imports.o io.o
json.o memorypool.o message.o parquet.o r_to_arrow.o recordbatch.o
recordbatchreader.o recordbatchwriter.o safe-call-into-r-impl.o scalar.o
schema.o symbols.o table.o threadpool.o type_infer.o
-L/tmp/Rtmpuh87oc/R.INSTALL67114493a3de/arrow/libarrow/arrow-9.0.0.20220809/lib
-larrow_dataset -lparquet -larrow -larrow_bundled_dependencies -lz
SNAPPY_LIB-NOTFOUND /home/ec2-user/anaconda3/envs/R/lib/libbz2.so -pthread
-larrow -larrow_bundled_dependencies -larrow_dataset -lparquet -lssl -lcrypto
-lcurl -lssl -lcrypto -lcurl -L/home/ec2-user/anaconda3/envs/R/lib/R/lib -lR
x86_64-conda-linux-gnu-c++: error: SNAPPY_LIB-NOTFOUND: No such file or
directory
make: *** [/home/ec2-user/anaconda3/envs/R/lib/R/share/make/shlib.mk:10:
arrow.so] Error 1{noformat}
Snappy is installed on the systems, and both shared object (.so) and cmake
files are there, where I've tried setting the system env variables Snappy_DIR
and Snappy_LIB to point at them, but to no avail.
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