cecelg-um opened a new issue, #34061: URL: https://github.com/apache/arrow/issues/34061
### Describe the bug, including details regarding any error messages, version, and platform. Hi there - I am trying to install arrow on my university HPC and get the following error..... My problem seems to differ the other HPC issues (#13425 - https://github.com/apache/arrow/issues/13425#issue-1282287001).... any idea what the issue could be? ``` (base) [cxl1148@login4 ~]$ module load rstudio (base) [cxl1148@login4 ~]$ R R version 4.1.0 (2021-05-18) -- "Camp Pontanezen" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > Sys.setenv("ARROW_R_DEV" = TRUE) > install.packages("arrow") Installing package into ‘/nethome/cxl1148/R/x86_64-pc-linux-gnu-library/4.1’ (as ‘lib’ is unspecified) --- Please select a CRAN mirror for use in this session --- Secure CRAN mirrors 1: 0-Cloud [https] 2: Australia (Canberra) [https] 3: Australia (Melbourne 1) [https] 4: Australia (Melbourne 2) [https] 5: Australia (Perth) [https] 6: Austria [https] 7: Belgium (Brussels) [https] 8: Brazil (PR) [https] 9: Brazil (RJ) [https] 10: Brazil (SP 1) [https] 11: Brazil (SP 2) [https] 12: Bulgaria [https] 13: Canada (MB) [https] 14: Canada (ON 3) [https] 15: Chile (Santiago) [https] 16: China (Beijing 2) [https] 17: China (Beijing 3) [https] 18: China (Hefei) [https] 19: China (Hong Kong) [https] 20: China (Guangzhou) [https] 21: China (Jinan) [https] 22: China (Lanzhou) [https] 23: China (Nanjing) [https] 24: China (Shanghai 2) [https] 25: China (Shenzhen) [https] 26: Colombia (Cali) [https] 27: Costa Rica [https] 28: Cyprus [https] 29: Czech Republic [https] 30: Denmark [https] 31: East Asia [https] 32: Ecuador (Cuenca) [https] 33: France (Lyon 1) [https] 34: France (Lyon 2) [https] 35: France (Marseille) [https] 36: France (Paris 1) [https] 37: Germany (Erlangen) [https] 38: Germany (Leipzig) [https] 39: Germany (Göttingen) [https] 40: Germany (Münster) [https] 41: Germany (Regensburg) [https] 42: Greece [https] 43: Hungary [https] 44: Iceland [https] 45: India [https] 46: Indonesia (Banda Aceh) [https] 47: Iran (Mashhad) [https] 48: Italy (Milano) [https] 49: Italy (Padua) [https] 50: Japan (Tokyo) [https] 51: Japan (Yonezawa) [https] 52: Korea (Gyeongsan-si) [https] 53: Korea (Ulsan) [https] 54: Malaysia [https] 55: Mexico (Mexico City) [https] 56: Mexico (Texcoco) [https] 57: Morocco [https] 58: Netherlands (Dronten) [https] 59: New Zealand [https] 60: Norway [https] 61: South Africa (Johannesburg) [https] 62: Spain (A Coruña) [https] 63: Spain (Madrid) [https] 64: Sweden (Umeå) [https] 65: Switzerland (Zurich 1) [https] 66: Taiwan (Taipei) [https] 67: Turkey (Denizli) [https] 68: Turkey (Istanbul) [https] 69: Turkey (Mersin) [https] 70: UK (Bristol) [https] 71: UK (London 1) [https] 72: USA (IA) [https] 73: USA (MI) [https] 74: USA (MO) [https] 75: USA (OH) [https] 76: USA (OR) [https] 77: USA (TN) [https] 78: USA (TX 1) [https] 79: United Arab Emirates [https] 80: Uruguay [https] 81: (other mirrors) Selection: 1 trying URL 'https://cloud.r-project.org/src/contrib/arrow_10.0.1.tar.gz' Content type 'application/x-gzip' length 4845316 bytes (4.6 MB) ================================================== downloaded 4.6 MB * installing *source* package ‘arrow’ ... ** package ‘arrow’ successfully unpacked and MD5 sums checked ** using staged installation *** Checking glibc version trying URL 'https://apache.jfrog.io/artifactory/arrow/r/10.0.1/libarrow/bin/centos-7/arrow-10.0.1.zip' Content type 'application/zip' length 31886026 bytes (30.4 MB) ================================================== downloaded 30.4 MB *** Successfully retrieved C++ binaries (centos-7) PKG_CFLAGS=-I/tmp/RtmpXAzexN/R.INSTALL52c8286a0f8d/arrow/libarrow/arrow-10.0.1/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS PKG_LIBS=-L/tmp/RtmpXAzexN/R.INSTALL52c8286a0f8d/arrow/libarrow/arrow-10.0.1/lib -larrow_dataset -lparquet -pthread -L/arrow/r/libarrow/dist/lib -larrow -larrow_bundled_dependencies -larrow -larrow_bundled_dependencies -larrow_dataset -lparquet -lssl -lcrypto -lcurl -lssl -lcrypto -lcurl ** libs /share/builds/spack-compilers/opt/spack/linux-centos7-sandybridge/gcc-8.3.1/gcc-8.3.0-mnwujmnexs6zvenuhlu5m4io2om4sg55/bin/g++ -std=gnu++17 -I"/share/builds/spack/opt/spack/linux-centos7-sandybridge/gcc-8.3.0/r-4.1.0-wsuhybx36dpwkrryfjhg3kph2ytyplj7/rlib/R/include" -DNDEBUG -I/tmp/RtmpXAzexN/R.INSTALL52c8286a0f8d/arrow/libarrow/arrow-10.0.1/include -DARROW_R_WITH_PARQUET 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array_to_vector.cpp -o array_to_vector.o /share/builds/spack-compilers/opt/spack/linux-centos7-sandybridge/gcc-8.3.1/gcc-8.3.0-mnwujmnexs6zvenuhlu5m4io2om4sg55/bin/g++ -std=gnu++17 -I"/share/builds/spack/opt/spack/linux-centos7-sandybridge/gcc-8.3.0/r-4.1.0-wsuhybx36dpwkrryfjhg3kph2ytyplj7/rlib/R/include" -DNDEBUG -I/tmp/RtmpXAzexN/R.INSTALL52c8286a0f8d/arrow/libarrow/arrow-10.0.1/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/nethome/cxl1148/R/x86_64-pc-linux-gnu-library/4.1/cpp11/include' -I/usr/local/include -fpic -g -O2 -c arraydata.cpp -o arraydata.o /share/builds/spack-compilers/opt/spack/linux-centos7-sandybridge/gcc-8.3.1/gcc-8.3.0-mnwujmnexs6zvenuhlu5m4io2om4sg55/bin/g++ -std=gnu++17 -I"/share/builds/spack/opt/spack/linux-centos7-sandybridge/gcc-8.3.0/r-4.1.0-wsuhybx36dpwkrryfjhg3kph2ytyplj7/rlib/R/include" -DNDEBUG -I/tmp/RtmpXAzexN/R.INSTALL52c8286a0f8d/arrow/libarrow/arrow-10.0.1/include 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-I"/share/builds/spack/opt/spack/linux-centos7-sandybridge/gcc-8.3.0/r-4.1.0-wsuhybx36dpwkrryfjhg3kph2ytyplj7/rlib/R/include" -DNDEBUG -I/tmp/RtmpXAzexN/R.INSTALL52c8286a0f8d/arrow/libarrow/arrow-10.0.1/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/nethome/cxl1148/R/x86_64-pc-linux-gnu-library/4.1/cpp11/include' -I/usr/local/include -fpic -g -O2 -c r_to_arrow.cpp -o r_to_arrow.o /share/builds/spack-compilers/opt/spack/linux-centos7-sandybridge/gcc-8.3.1/gcc-8.3.0-mnwujmnexs6zvenuhlu5m4io2om4sg55/bin/g++ -std=gnu++17 -I"/share/builds/spack/opt/spack/linux-centos7-sandybridge/gcc-8.3.0/r-4.1.0-wsuhybx36dpwkrryfjhg3kph2ytyplj7/rlib/R/include" -DNDEBUG -I/tmp/RtmpXAzexN/R.INSTALL52c8286a0f8d/arrow/libarrow/arrow-10.0.1/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/nethome/cxl1148/R/x86_64-pc-linux-gnu-library/4.1/cpp11/include' -I/usr/local/include -fpic -g -O2 -c recordbatch.cpp -o recordbatch.o /share/builds/spack-compilers/opt/spack/linux-centos7-sandybridge/gcc-8.3.1/gcc-8.3.0-mnwujmnexs6zvenuhlu5m4io2om4sg55/bin/g++ -std=gnu++17 -I"/share/builds/spack/opt/spack/linux-centos7-sandybridge/gcc-8.3.0/r-4.1.0-wsuhybx36dpwkrryfjhg3kph2ytyplj7/rlib/R/include" -DNDEBUG -I/tmp/RtmpXAzexN/R.INSTALL52c8286a0f8d/arrow/libarrow/arrow-10.0.1/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/nethome/cxl1148/R/x86_64-pc-linux-gnu-library/4.1/cpp11/include' -I/usr/local/include -fpic -g -O2 -c recordbatchreader.cpp -o recordbatchreader.o /share/builds/spack-compilers/opt/spack/linux-centos7-sandybridge/gcc-8.3.1/gcc-8.3.0-mnwujmnexs6zvenuhlu5m4io2om4sg55/bin/g++ -std=gnu++17 -I"/share/builds/spack/opt/spack/linux-centos7-sandybridge/gcc-8.3.0/r-4.1.0-wsuhybx36dpwkrryfjhg3kph2ytyplj7/rlib/R/include" -DNDEBUG -I/tmp/RtmpXAzexN/R.INSTALL52c8286a0f8d/arrow/libarrow/arrow-10.0.1/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/nethome/cxl1148/R/x86_64-pc-linux-gnu-library/4.1/cpp11/include' -I/usr/local/include -fpic -g -O2 -c recordbatchwriter.cpp -o recordbatchwriter.o /share/builds/spack-compilers/opt/spack/linux-centos7-sandybridge/gcc-8.3.1/gcc-8.3.0-mnwujmnexs6zvenuhlu5m4io2om4sg55/bin/g++ -std=gnu++17 -I"/share/builds/spack/opt/spack/linux-centos7-sandybridge/gcc-8.3.0/r-4.1.0-wsuhybx36dpwkrryfjhg3kph2ytyplj7/rlib/R/include" -DNDEBUG -I/tmp/RtmpXAzexN/R.INSTALL52c8286a0f8d/arrow/libarrow/arrow-10.0.1/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/nethome/cxl1148/R/x86_64-pc-linux-gnu-library/4.1/cpp11/include' -I/usr/local/include -fpic -g -O2 -c safe-call-into-r-impl.cpp -o safe-call-into-r-impl.o /share/builds/spack-compilers/opt/spack/linux-centos7-sandybridge/gcc-8.3.1/gcc-8.3.0-mnwujmnexs6zvenuhlu5m4io2om4sg55/bin/g++ -std=gnu++17 -I"/share/builds/spack/opt/spack/linux-centos7-sandybridge/gcc-8.3.0/r-4.1.0-wsuhybx36dpwkrryfjhg3kph2ytyplj7/rlib/R/include" -DNDEBUG -I/tmp/RtmpXAzexN/R.INSTALL52c8286a0f8d/arrow/libarrow/arrow-10.0.1/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/nethome/cxl1148/R/x86_64-pc-linux-gnu-library/4.1/cpp11/include' -I/usr/local/include -fpic -g -O2 -c scalar.cpp -o scalar.o /share/builds/spack-compilers/opt/spack/linux-centos7-sandybridge/gcc-8.3.1/gcc-8.3.0-mnwujmnexs6zvenuhlu5m4io2om4sg55/bin/g++ -std=gnu++17 -I"/share/builds/spack/opt/spack/linux-centos7-sandybridge/gcc-8.3.0/r-4.1.0-wsuhybx36dpwkrryfjhg3kph2ytyplj7/rlib/R/include" -DNDEBUG -I/tmp/RtmpXAzexN/R.INSTALL52c8286a0f8d/arrow/libarrow/arrow-10.0.1/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/nethome/cxl1148/R/x86_64-pc-linux-gnu-library/4.1/cpp11/include' -I/usr/local/include -fpic -g -O2 -c schema.cpp -o schema.o /share/builds/spack-compilers/opt/spack/linux-centos7-sandybridge/gcc-8.3.1/gcc-8.3.0-mnwujmnexs6zvenuhlu5m4io2om4sg55/bin/g++ -std=gnu++17 -I"/share/builds/spack/opt/spack/linux-centos7-sandybridge/gcc-8.3.0/r-4.1.0-wsuhybx36dpwkrryfjhg3kph2ytyplj7/rlib/R/include" -DNDEBUG -I/tmp/RtmpXAzexN/R.INSTALL52c8286a0f8d/arrow/libarrow/arrow-10.0.1/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/nethome/cxl1148/R/x86_64-pc-linux-gnu-library/4.1/cpp11/include' -I/usr/local/include -fpic -g -O2 -c symbols.cpp -o symbols.o /share/builds/spack-compilers/opt/spack/linux-centos7-sandybridge/gcc-8.3.1/gcc-8.3.0-mnwujmnexs6zvenuhlu5m4io2om4sg55/bin/g++ -std=gnu++17 -I"/share/builds/spack/opt/spack/linux-centos7-sandybridge/gcc-8.3.0/r-4.1.0-wsuhybx36dpwkrryfjhg3kph2ytyplj7/rlib/R/include" -DNDEBUG -I/tmp/RtmpXAzexN/R.INSTALL52c8286a0f8d/arrow/libarrow/arrow-10.0.1/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/nethome/cxl1148/R/x86_64-pc-linux-gnu-library/4.1/cpp11/include' -I/usr/local/include -fpic -g -O2 -c table.cpp -o table.o /share/builds/spack-compilers/opt/spack/linux-centos7-sandybridge/gcc-8.3.1/gcc-8.3.0-mnwujmnexs6zvenuhlu5m4io2om4sg55/bin/g++ -std=gnu++17 -I"/share/builds/spack/opt/spack/linux-centos7-sandybridge/gcc-8.3.0/r-4.1.0-wsuhybx36dpwkrryfjhg3kph2ytyplj7/rlib/R/include" -DNDEBUG -I/tmp/RtmpXAzexN/R.INSTALL52c8286a0f8d/arrow/libarrow/arrow-10.0.1/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/nethome/cxl1148/R/x86_64-pc-linux-gnu-library/4.1/cpp11/include' -I/usr/local/include -fpic -g -O2 -c threadpool.cpp -o threadpool.o /share/builds/spack-compilers/opt/spack/linux-centos7-sandybridge/gcc-8.3.1/gcc-8.3.0-mnwujmnexs6zvenuhlu5m4io2om4sg55/bin/g++ -std=gnu++17 -I"/share/builds/spack/opt/spack/linux-centos7-sandybridge/gcc-8.3.0/r-4.1.0-wsuhybx36dpwkrryfjhg3kph2ytyplj7/rlib/R/include" -DNDEBUG -I/tmp/RtmpXAzexN/R.INSTALL52c8286a0f8d/arrow/libarrow/arrow-10.0.1/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/nethome/cxl1148/R/x86_64-pc-linux-gnu-library/4.1/cpp11/include' -I/usr/local/include -fpic -g -O2 -c type_infer.cpp -o type_infer.o /share/builds/spack-compilers/opt/spack/linux-centos7-sandybridge/gcc-8.3.1/gcc-8.3.0-mnwujmnexs6zvenuhlu5m4io2om4sg55/bin/g++ -std=gnu++17 -shared -L/share/builds/spack/opt/spack/linux-centos7-sandybridge/gcc-8.3.0/r-4.1.0-wsuhybx36dpwkrryfjhg3kph2ytyplj7/rlib/R/lib -L/share/builds/spack/opt/spack/linux-centos7-sandybridge/gcc-8.3.0/r-4.1.0-wsuhybx36dpwkrryfjhg3kph2ytyplj7/rlib/R/lib -Wl,-rpath,/share/builds/spack/opt/spack/linux-centos7-sandybridge/gcc-8.3.0/r-4.1.0-wsuhybx36dpwkrryfjhg3kph2ytyplj7/rlib/R/lib -o arrow.so RTasks.o altrep.o array.o array_to_vector.o arraydata.o arrowExports.o bridge.o buffer.o chunkedarray.o compression.o compute-exec.o compute.o config.o csv.o dataset.o datatype.o expression.o extension-impl.o feather.o field.o filesystem.o imports.o io.o json.o memorypool.o message.o parquet.o r_to_arrow.o recordbatch.o recordbatchreader.o recordbatchwriter.o safe-call-into-r-impl.o scalar.o schema.o symbols.o table.o threadpool.o type_infer.o -L/tmp/RtmpXAzexN/ R.INSTALL52c8286a0f8d/arrow/libarrow/arrow-10.0.1/lib -larrow_dataset -lparquet -pthread -L/arrow/r/libarrow/dist/lib -larrow -larrow_bundled_dependencies -larrow -larrow_bundled_dependencies -larrow_dataset -lparquet -lssl -lcrypto -lcurl -lssl -lcrypto -lcurl -L/share/builds/spack/opt/spack/linux-centos7-sandybridge/gcc-8.3.0/r-4.1.0-wsuhybx36dpwkrryfjhg3kph2ytyplj7/rlib/R/lib -lR installing to /nethome/cxl1148/R/x86_64-pc-linux-gnu-library/4.1/00LOCK-arrow/00new/arrow/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for ‘arrow’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/nethome/cxl1148/R/x86_64-pc-linux-gnu-library/4.1/00LOCK-arrow/00new/arrow/libs/arrow.so': /nethome/cxl1148/R/x86_64-pc-linux-gnu-library/4.1/00LOCK-arrow/00new/arrow/libs/arrow.so: undefined symbol: _ZNK5arrow8DataType18ComputeFingerprintB5cxx11Ev Error: loading failed Execution halted ERROR: loading failed * removing ‘/nethome/cxl1148/R/x86_64-pc-linux-gnu-library/4.1/arrow’ The downloaded source packages are in ‘/tmp/RtmpsTp1rt/downloaded_packages’ Warning message: In install.packages("arrow") : installation of package ‘arrow’ had non-zero exit status ``` ### Component(s) R -- This is an automated message from the Apache Git Service. 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