PMassicotte opened a new issue, #34211:
URL: https://github.com/apache/arrow/issues/34211
### Describe the bug, including details regarding any error messages,
version, and platform.
I am randomly getting segfault when using `write_parquet()` with the latest
release (the same code works well with v 10.0.1).
```
*** caught segfault ***
address 0x18, cause 'memory not mapped'
Traceback:
1: Table__from_dots(dots, schema, option_use_threads())
2: Table$create(x, schema = schema)
3: as_arrow_table.data.frame(x)
4: as_arrow_table(x)
5: doTryCatch(return(expr), name, parentenv, handler)
6: tryCatchOne(expr, names, parentenv, handlers[[1L]])
7: tryCatchList(expr, classes, parentenv, handlers)
8: tryCatch(as_arrow_table(x), arrow_no_method_as_arrow_table = function(e)
{ abort("Object must be coercible to an Arrow Table using
`as_arrow_table()`", parent = e, call = caller_env(2))})
9: as_writable_table(x)
10: write_parquet(bioargo_dark_corrected, here("data", "raw", "bioargo",
"bioargo_correction_c.parquet"))
11: eval(ei, envir)
12: eval(ei, envir)
13: withVisible(eval(ei, envir))
14: source(here("R", "001c_bioargo_chla_dark_correction.R"))
Possible actions:
1: abort (with core dump, if enabled)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace
```
Following this
(https://arrow.apache.org/docs/7.0/r/articles/developers/debugging.html), here
is the exact line when the code crashes.
```
Thread 1 "R" received signal SIGSEGV, Segmentation fault.
0x00007fffdccb0956 in std::__shared_ptr<arrow::DataType,
(__gnu_cxx::_Lock_policy)2>::__shared_ptr (this=0x7ffffffc4d50) at
/usr/include/c++/12/bits/shared_ptr_base.h:1522
1522 __shared_ptr(const __shared_ptr&) noexcept = default;
````
```r
$> sessionInfo()
R version 4.2.2 (2022-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 22.10
Matrix products: default
BLAS/LAPACK:
/opt/intel/compilers_and_libraries_2020.4.304/linux/mkl/lib/intel64_lin/libmkl_gf_lp64.so
locale:
[1] LC_CTYPE=en_CA.UTF-8 LC_NUMERIC=C
LC_TIME=en_CA.UTF-8
[4] LC_COLLATE=en_CA.UTF-8 LC_MONETARY=en_CA.UTF-8
LC_MESSAGES=en_CA.UTF-8
[7] LC_PAPER=en_CA.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=en_CA.UTF-8
LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] gsw_1.1-1 fishmethods_1.12-0 santoku_0.9.0
arrow_11.0.0.100000089
[5] yardstick_1.1.0 workflowsets_1.0.0 workflows_1.1.2
tune_1.0.1
[9] rsample_1.1.1 recipes_1.0.4 parsnip_1.0.3
modeldata_1.1.0
[13] infer_1.0.4 dials_1.1.0 scales_1.2.1
broom_1.0.3
[17] tidymodels_1.0.0 data.table_1.14.6 furrr_0.3.1
future_1.31.0
[21] pins_1.1.0 tidyterra_0.3.1 terra_1.7-3
sf_1.0-9
[25] patchwork_1.1.2 tidync_0.3.0 here_1.0.1
glue_1.6.2
[29] ggpmthemes_0.0.2 lubridate_1.9.2 forcats_1.0.0
stringr_1.5.0
[33] dplyr_1.1.0 purrr_1.0.1 readr_2.1.4
tidyr_1.3.0
[37] tibble_3.1.8 ggplot2_3.4.1 tidyverse_1.3.2.9000
loaded via a namespace (and not attached):
[1] minqa_1.2.5 colorspace_2.1-0 ellipsis_0.3.2
class_7.3-21
[5] rprojroot_2.0.3 fs_1.6.1 rstudioapi_0.14
proxy_0.4-27
[9] farver_2.1.1 listenv_0.9.0 bit64_4.0.5
prodlim_2019.11.13
[13] fansi_1.0.4 codetools_0.2-19 splines_4.2.2 ncdf4_1.21
[17] extrafont_0.19 jsonlite_1.8.4 nloptr_2.0.3
Rttf2pt1_1.3.12
[21] compiler_4.2.2 backports_1.4.1 assertthat_0.2.1
Matrix_1.5-3
[25] cli_3.6.0 tools_4.2.2 gtable_0.3.1
rappdirs_0.3.3
[29] Rcpp_1.0.10 RNetCDF_2.6-2 DiceDesign_1.9 vctrs_0.5.2
[33] nlme_3.1-162 extrafontdb_1.0 iterators_1.0.14
timeDate_4022.108
[37] gower_1.0.1 globals_0.16.2 lme4_1.1-31
timechange_0.2.0
[41] lifecycle_1.0.3 ncmeta_0.3.5 MASS_7.3-58.2
ipred_0.9-13
[45] hms_1.1.2 parallel_4.2.2 TMB_1.9.2
rpart_4.1.19
[49] stringi_1.7.12 foreach_1.5.2 e1071_1.7-13 lhs_1.1.6
[53] boot_1.3-28.1 hardhat_1.2.0 lava_1.7.1 rlang_1.0.6
[57] pkgconfig_2.0.3 lattice_0.20-45 labeling_0.4.2 bit_4.0.5
[61] tidyselect_1.2.0 parallelly_1.34.0 magrittr_2.0.3 R6_2.5.1
[65] generics_0.1.3 bootstrap_2019.6 DBI_1.1.3
pillar_1.8.1
[69] withr_2.5.0 units_0.8-1 survival_3.5-3 nnet_7.3-18
[73] future.apply_1.10.0 crayon_1.5.2 KernSmooth_2.23-20 utf8_1.2.3
[77] tzdb_0.3.0 grid_4.2.2 digest_0.6.31
classInt_0.4-8
[81] numDeriv_2016.8-1.1 GPfit_1.0-8 munsell_0.5.0
```
### Component(s)
R
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