Tyson Hamilton created BEAM-10899:
-------------------------------------
Summary: test_FhirIO_exportFhirResourcesGcs flake with OOM
Key: BEAM-10899
URL: https://issues.apache.org/jira/browse/BEAM-10899
Project: Beam
Issue Type: Bug
Components: io-java-gcp, test-failures
Reporter: Tyson Hamilton
The `test_FhirIO_exportFhirResourcesGcs` test has failed with OOMs several
times recently. Examples,
[https://ci-beam.apache.org/view/PostCommit/job/beam_PostCommit_Java/6597/testReport/org.apache.beam.sdk.io.gcp.healthcare/FhirIOLROIT/test_FhirIO_exportFhirResourcesGcs/]
[https://ci-beam.apache.org/view/PostCommit/job/beam_PostCommit_Java/6596/testReport/org.apache.beam.sdk.io.gcp.healthcare/FhirIOLROIT/test_FhirIO_exportFhirResourcesGcs/]
Error:
{code:java}
Error Message
org.apache.beam.sdk.Pipeline$PipelineExecutionException:
java.lang.OutOfMemoryError: Java heap space
Stacktrace
org.apache.beam.sdk.Pipeline$PipelineExecutionException:
java.lang.OutOfMemoryError: Java heap space
at
org.apache.beam.runners.direct.DirectRunner$DirectPipelineResult.waitUntilFinish(DirectRunner.java:353)
at
org.apache.beam.runners.direct.DirectRunner$DirectPipelineResult.waitUntilFinish(DirectRunner.java:321)
at
org.apache.beam.runners.direct.DirectRunner.run(DirectRunner.java:216)
at org.apache.beam.runners.direct.DirectRunner.run(DirectRunner.java:67)
at org.apache.beam.sdk.Pipeline.run(Pipeline.java:317)
at org.apache.beam.sdk.testing.TestPipeline.run(TestPipeline.java:350)
at org.apache.beam.sdk.testing.TestPipeline.run(TestPipeline.java:331)
at
org.apache.beam.sdk.io.gcp.healthcare.FhirIOLROIT.test_FhirIO_exportFhirResourcesGcs(FhirIOLROIT.java:91)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at
org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
at
org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at
org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
at
org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at
org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26)
at
org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27)
at
org.apache.beam.sdk.testing.TestPipeline$1.evaluate(TestPipeline.java:319)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:305)
at
org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:365)
at
org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
at
org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:330)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:78)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:328)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:65)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:292)
at
org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:305)
at org.junit.runners.ParentRunner.run(ParentRunner.java:412)
at
org.gradle.api.internal.tasks.testing.junit.JUnitTestClassExecutor.runTestClass(JUnitTestClassExecutor.java:110)
at
org.gradle.api.internal.tasks.testing.junit.JUnitTestClassExecutor.execute(JUnitTestClassExecutor.java:58)
at
org.gradle.api.internal.tasks.testing.junit.JUnitTestClassExecutor.execute(JUnitTestClassExecutor.java:38)
at
org.gradle.api.internal.tasks.testing.junit.AbstractJUnitTestClassProcessor.processTestClass(AbstractJUnitTestClassProcessor.java:62)
at
org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.processTestClass(SuiteTestClassProcessor.java:51)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at
org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36)
at
org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
at
org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33)
at
org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94)
at com.sun.proxy.$Proxy2.processTestClass(Unknown Source)
at
org.gradle.api.internal.tasks.testing.worker.TestWorker.processTestClass(TestWorker.java:119)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at
org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36)
at
org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
at
org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:182)
at
org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:164)
at
org.gradle.internal.remote.internal.hub.MessageHub$Handler.run(MessageHub.java:414)
at
org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:64)
at
org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:48)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at
org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:56)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.OutOfMemoryError: Java heap space
at
com.google.api.client.googleapis.media.MediaHttpUploader.buildContentChunk(MediaHttpUploader.java:608)
at
com.google.api.client.googleapis.media.MediaHttpUploader.resumableUpload(MediaHttpUploader.java:407)
at
com.google.api.client.googleapis.media.MediaHttpUploader.upload(MediaHttpUploader.java:335)
at
com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:550)
at
com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:474)
at
com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:591)
at
com.google.cloud.hadoop.util.AbstractGoogleAsyncWriteChannel$UploadOperation.call(AbstractGoogleAsyncWriteChannel.java:107)
Standard Error
Sep 14, 2020 6:40:06 PM
org.apache.beam.runners.dataflow.options.DataflowPipelineOptions$StagingLocationFactory
create
INFO: No stagingLocation provided, falling back to gcpTempLocation
Sep 14, 2020 6:40:06 PM org.apache.beam.runners.dataflow.DataflowRunner
fromOptions
INFO: PipelineOptions.filesToStage was not specified. Defaulting to files from
the classpath: will stage 183 files. Enable logging at DEBUG level to see which
files will be staged.
Sep 14, 2020 6:40:06 PM org.apache.beam.runners.d
...[truncated 129361 chars]...
eJob logTerminalState
INFO: Job 2020-09-14_11_40_11-3828548869464058478 finished with status DONE.
Sep 14, 2020 6:44:01 PM org.apache.beam.runners.dataflow.TestDataflowRunner
checkForPAssertSuccess
INFO: Success result for Dataflow job 2020-09-14_11_40_11-3828548869464058478.
Found 0 success, 0 failures out of 0 expected assertions.
Sep 14, 2020 6:44:01 PM
com.google.api.client.googleapis.services.AbstractGoogleClient <init>
WARNING: Application name is not set. Call Builder#setApplicationName.
{code}
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